- Transcript 'Phmamm.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S58.g02081.02.t
Possible name(s)
PCDH10; PCDH12; PCDH18
Gene model
Location
S58 [31,062 / 36,531]
Amino acid sequence
Length: 1,052
>Phmamm.CG.MTP2014.S58.g02081.02.p
MSEGWQNFASVALLMTAWFITSSIASRAFTQRFHLKENSPTGTIVAELADILDTKITPKK
NFQLLSEKLMTYGTKSTDKRRWMALDETTGTITLQRELNREAICGDLSSCLFQLQIFVRT
DFRMVNLEVEVLDVNEHAPAFPVKYAIVNVSEEAQIGDVISLDRYLARDRDAGNNSIIVY
VLSPTNYFSLVQSSDETGSPHLQLKVERSLDYERKPLFDLTLNAEDKGEPRLSSQVPLQV
RVIDANDNSPRFDSEEYPVVLRENLEPGYVITRVQARDPDSGASGTVRYFLATRNPESVH
RIVAVNEVTGEVTLKSELDRESNDKTIIYIEARDLGERVQKLGRTRLVLHVGDVNDNAPV
ISISYIAPSDGNIVFVSETSPNPTYFAYVSAKDADFDINGLVDIEIKNVVTVVPTESTPE
TTLASQHADALDTFVLNKNGFLGISKMLDREVTERYTITLQACDQGKDQQCSYEQLDVVV
MDENDHAPQFSQSEVNVTIAENASVGSVITTITATDGDNVNLPALKLNEDDETISSTNGD
LSYSLTGGDGSFAIEPRSGSISLVRSIDREQYSQWTITVTATDGGGQKAMCTLNVFVTDV
NDNTPQFTNPVNDDLTIYATIVRDDIITRMQAVDYDLGINGEMKFSLVTVDGIQQTGHVN
TSLFVLNSTNGDLRLNMSSPLLRSSLGPHSIVIQVRDGGKPTRKSERRMTVIITDKLTLP
TMPTVSDKASLFKSDSSFLIIIVALSSALVLLIIVSAAIACKCRKENKKVRTYSCSKAHE
DRRSSVKLIDENATTLPRTTSKESLKGSIAWSQTSNKRQHSQTYDSTTDVTNLSRSDAVM
SHQFTSSGASLNNPSNSRQVDSTCVIKSRPLASSSQLEGDSGHGDSDPDVTSGDISFEQG
FSRQRKPSELSSVDGMYIHNESLGPHCNKQCLELGHSDTCWMPTTTEDNPSNFLEIRTPA
STELSEKSGNLEPIPETQPVRSFWAHVSSQSTMSSIYSSVSPTLYATPNHDTYADPRHVM
LETRFSVRNANARNNSTTDSITTGYVTEPEII
Nucleotide sequence
Length: 3,159
>Phmamm.CG.MTP2014.S58.g02081.02.t
ATGAGTGAGGGCTGGCAGAATTTCGCCTCGGTGGCGCTGTTGATGACTGCATGGTTCATT
ACGTCATCGATTGCCTCCCGAGCGTTCACTCAAAGGTTTCATTTAAAGGAAAATTCGCCG
ACCGGTACAATTGTCGCGGAGCTCGCTGACATTTTAGACACGAAGATAACGCCAAAAAAG
AACTTTCAGCTATTGAGCGAGAAACTGATGACATACGGAACCAAGTCGACCGACAAGCGC
AGGTGGATGGCACTCGATGAAACCACGGGGACGATAACTCTACAGCGCGAGCTCAACCGC
GAGGCTATCTGCGGAGACTTGTCGTCTTGTCTTTTTCAACTCCAGATCTTTGTGCGAACT
GACTTCCGTATGGTGAACCTTGAAGTGGAAGTGCTGGACGTCAACGAGCATGCCCCGGCG
TTCCCGGTCAAGTACGCGATTGTCAACGTCAGCGAGGAGGCACAGATCGGTGACGTCATC
AGCCTTGATCGGTATCTGGCACGTGATCGCGACGCAGGCAACAACTCTATCATCGTGTAT
GTGCTGAGCCCCACCAATTATTTTAGCCTTGTTCAGTCAAGCGACGAAACGGGAAGTCCA
CATCTGCAGCTCAAAGTCGAACGGTCTCTCGATTACGAACGCAAGCCTCTTTTCGATCTT
ACTCTCAACGCTGAAGACAAGGGCGAGCCACGGTTGTCAAGTCAGGTGCCTCTGCAAGTT
AGAGTTATTGATGCAAATGACAACAGTCCAAGATTTGACAGCGAGGAATATCCTGTGGTG
CTGCGAGAGAACCTTGAACCCGGATACGTTATCACCCGCGTTCAGGCAAGAGACCCTGAT
TCCGGTGCTTCGGGAACAGTGAGATATTTTCTCGCCACAAGAAACCCCGAATCTGTGCAT
CGAATCGTTGCCGTTAATGAAGTCACCGGAGAGGTGACGCTCAAAAGCGAACTGGACAGA
GAGTCAAACGACAAAACTATAATCTACATCGAAGCCAGGGATTTGGGAGAAAGAGTACAG
AAGCTTGGCCGAACACGACTTGTACTCCATGTTGGGGATGTTAACGACAACGCTCCAGTT
ATTAGTATCAGCTACATAGCGCCATCTGATGGAAATATAGTGTTTGTTTCTGAAACATCA
CCCAACCCGACGTATTTTGCGTACGTAAGCGCCAAAGACGCCGATTTTGATATCAACGGT
TTGGTAGACATAGAAATCAAAAACGTTGTAACAGTTGTGCCAACCGAATCGACTCCCGAA
ACAACATTGGCAAGCCAACATGCCGATGCCCTGGACACATTCGTACTGAATAAAAATGGA
TTTCTAGGCATCAGTAAAATGCTGGACAGGGAGGTCACGGAGAGATACACTATTACATTA
CAAGCCTGTGACCAAGGAAAAGATCAACAATGCTCTTACGAACAGTTGGATGTTGTTGTG
ATGGACGAGAACGACCACGCCCCTCAATTTAGCCAATCAGAGGTTAATGTAACCATTGCT
GAGAATGCATCTGTCGGAAGTGTGATAACAACCATAACAGCTACTGACGGTGACAATGTA
AATCTTCCAGCACTTAAACTTAACGAGGACGATGAAACGATTTCGTCGACTAATGGCGAT
TTAAGCTACTCGCTCACTGGAGGTGATGGATCGTTCGCAATCGAACCAAGAAGTGGGAGT
ATTAGCCTTGTAAGATCAATTGACAGAGAGCAATATTCACAATGGACGATAACTGTGACG
GCTACGGACGGCGGAGGTCAGAAAGCAATGTGCACATTAAACGTGTTCGTGACAGACGTT
AACGACAACACACCCCAATTCACCAACCCAGTGAACGACGACCTGACGATATACGCGACT
ATTGTGCGTGATGACATTATTACACGCATGCAGGCTGTGGATTACGATCTCGGTATTAAC
GGCGAGATGAAGTTTAGTTTGGTGACTGTGGACGGTATTCAACAAACAGGCCACGTTAAC
ACCTCACTCTTTGTTCTCAACTCTACAAATGGGGACCTACGCCTAAACATGAGCAGTCCA
TTGCTACGCTCAAGTCTCGGCCCACATAGCATCGTCATACAGGTACGTGATGGTGGAAAG
CCAACAAGAAAGAGCGAACGACGAATGACAGTGATCATCACCGATAAACTTACTCTGCCC
ACCATGCCAACCGTTTCGGACAAGGCTTCGTTATTCAAATCAGATTCGTCGTTTCTCATT
ATAATCGTGGCTCTCTCTTCTGCTCTTGTGCTTCTTATCATTGTTTCTGCAGCCATCGCA
TGCAAATGTAGAAAAGAAAATAAGAAAGTGCGAACGTACAGTTGCAGTAAGGCTCATGAA
GACCGACGTAGCTCAGTAAAACTCATTGATGAAAACGCTACCACCTTGCCTCGTACAACA
TCGAAAGAAAGCCTAAAAGGAAGCATCGCGTGGAGCCAAACATCAAATAAAAGACAACAT
TCCCAAACGTACGATTCGACAACCGACGTTACAAATTTATCCCGCAGTGATGCTGTCATG
TCACATCAGTTTACATCTTCTGGGGCAAGCCTAAATAACCCAAGCAACTCACGACAGGTT
GACTCTACCTGCGTCATTAAGTCCCGTCCTCTTGCGTCATCATCGCAACTCGAAGGCGAC
AGCGGACACGGCGACAGTGATCCTGACGTCACAAGCGGAGACATCTCATTTGAACAAGGC
TTTTCGCGACAAAGAAAACCGTCTGAATTAAGCTCCGTTGACGGAATGTACATTCATAAC
GAAAGTCTCGGACCGCATTGCAACAAACAATGTCTTGAGCTGGGACACAGCGATACCTGC
TGGATGCCGACGACTACAGAAGACAACCCAAGCAACTTTCTGGAAATACGCACACCCGCC
AGCACCGAGTTATCAGAAAAGTCGGGAAATCTTGAACCGATTCCCGAGACTCAACCAGTG
CGCTCTTTCTGGGCCCACGTTAGTTCACAGTCAACAATGAGTTCGATATACTCCAGCGTT
TCACCGACTCTGTACGCCACCCCCAATCACGATACCTACGCCGACCCGCGTCACGTAATG
CTCGAGACGCGCTTTTCGGTGAGAAATGCGAACGCACGGAACAACTCAACCACCGACAGT
ATTACGACAGGATATGTCACCGAGCCTGAAATCATTTAA
| Pfam |
Cadherin_N (IPR013164) - T[32-118] 1.4E-7 |
| SMART |
Cadherin (IPR002126) - T[44-139] 0.046 - T[165-250] 5.3E-19 - T[274-359] 7.7E-18 - T[389-488] 2.1E-11 - T[525-605] 4.2E-22 - T[630-721] 4.7E-4 |
| PRINTS |
Cadherin (IPR002126) - T[81-100] 3.7E-28 - T[252-281] 3.7E-28 - T[455-467] 3.7E-28 - T[469-488] 3.7E-28 - T[488-501] 3.7E-28 - T[557-583] 3.7E-28 - T[589-606] 3.7E-28 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[134-244] 5.85E-17 - T[240-365] 5.57E-25 - T[354-482] 7.42E-13 - T[478-610] 1.81E-25 - T[595-716] 7.59E-13 |
| Pfam |
Cadherin (IPR002126) - T[149-242] 3.6E-9 - T[257-341] 7.7E-13 - T[496-597] 3.1E-13 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[240-250] . - T[349-359] . - T[478-488] . - T[595-605] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PCD18_HUMAN | 26.19 % | 288 | 1.21E-81 |
| PCD12_HUMAN | 28.465 % | 277 | 1.21E-77 |
| PCD10_HUMAN | 27.212 % | 293 | 8.19E-84 |