Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S5.g00227.01.t

Possible name(s)

PABPC1; PABPC4; SF3B4

Gene model

Phmamm.CG.MTP2014.S5.g00227

Location

S5 [159,821 / 161,450]

Sequences

Amino acid sequence

Length: 252

>Phmamm.CG.MTP2014.S5.g00227.01.p
MIKLYGKPIRVNKASSHQKNLDVGANLFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD
PDTGNSKGYAFINFASFEASDAAMEAMNGQHLCNRPISISYAFKKDSKGERHGGAAERLL
AVQNPLSQADRPHTLFADAPTEMPPVNPDMMSMDMSVLPPPPMPLPGMPHMVPPMMPPMG
MGSVMPPPLGHMPPLPNGPPHDGDHNQRDQSGNQNMGGQSNMQSQNWGGPQNMGHMPPNM
MPSGPPMGMGTY

Nucleotide sequence

Length: 759

>Phmamm.CG.MTP2014.S5.g00227.01.t
ATGATAAAACTGTATGGCAAGCCTATACGAGTTAACAAGGCTTCGTCACATCAAAAGAAT
TTAGATGTTGGGGCAAATTTGTTTATTGGCAACCTGGATCCAGAGATTGATGAAAAACTC
CTGTATGATACTTTCAGTGCATTTGGTGTAATATTACAGACACCAAAGATTATGAGGGAC
CCAGACACTGGAAATTCGAAGGGTTATGCTTTCATTAACTTTGCCAGTTTTGAGGCATCT
GACGCAGCCATGGAGGCCATGAATGGACAGCATCTGTGCAATCGCCCAATCAGTATCTCT
TATGCTTTCAAAAAAGACTCCAAAGGAGAAAGGCATGGTGGAGCAGCAGAGAGACTGCTA
GCTGTTCAGAATCCACTTTCCCAAGCAGACAGGCCTCACACCCTCTTTGCTGATGCCCCA
ACAGAAATGCCTCCTGTAAATCCGGACATGATGTCAATGGATATGTCAGTTTTGCCTCCA
CCGCCTATGCCATTGCCAGGAATGCCACATATGGTTCCACCTATGATGCCACCAATGGGA
ATGGGATCAGTTATGCCTCCACCACTGGGTCATATGCCGCCACTGCCCAATGGTCCACCA
CACGATGGAGATCACAACCAAAGAGATCAGTCCGGTAATCAAAACATGGGCGGACAATCC
AACATGCAATCACAGAATTGGGGAGGCCCACAAAACATGGGCCACATGCCACCTAATATG
ATGCCTTCTGGACCACCAATGGGAATGGGTACGTACTAG

InterProScan

Gene3D	Nucleotide-bd_a/b_plait_sf (IPR012677) - T[11-112] 1.1E-25
SUPERFAMILY	RBD_domain_sf (IPR035979) - T[17-113] 4.79E-27
CDD	SF3B4_RRM2 (IPR034159) - T[24-106] 2.4822E-62
ProSiteProfiles	RRM_dom (IPR000504) - T[25-104] 17.165
SMART	RRM_dom (IPR000504) - T[26-100] 4.4E-24
Pfam	RRM_dom (IPR000504) - T[27-97] 1.2E-19

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SF3B4_HUMAN	91.912 %	264	5.8E-87
PABP1_HUMAN	39.316 %	79.3	6.56E-17
PABP4_HUMAN	41.88 %	82.4	6.23E-18