Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 938

>Phmamm.CG.MTP2014.S5.g00239.02.p
AVASVMPSNSPVEYSTSDTILRLSTSSTQSVDGDSKNVGKFIWPSGATYEGEFSCGCRNG
KGRQTWQDGSVYEGDFVKDMRHGTGQHKWQNGEVYEGKFFKDHRHGFGCYKWPDGTSYTG
TFYLDKKEGYGTFQFANGDLFEGLYKEDERFGPGVLTYSSTTPQCQDVGIWHREKLFRLC
ITAKNVFSMKEHPEYEYFPEENHAQIDMSSDFNNLHDQLGKEAASYTFLSDKFKSLIVSE
NTALPPGIESYSKDFEHLPQTLQHKQELDKAFFGSKYDLVKNDDLAVLVATNNTSIHMQI
QKHIYKHRLNADCVKFNVKAVISGKRLNNFGSKSGIIEEMSIALIEQAGLGNFRQVYSIL
KSGLVDANVMDCKGSGALLEAAINCHHKVVNLLLDCGANVNQVTDEAVSALSACHVFYYP
IDHFKYNIAEKYVQNHRRSEEKEKRGRPRSPAIDLLMRNRRRSSSSGERKRRRSSQSPDR
ASPDSLMSRRKTIASPERLRIAGREKLTPSPVNMGETEAIETCKSDLKIKKVFRDIMSAK
SQGRSSEAKSFNFDPAVDDVSSVDAKSQHTSKDDLTFESNVNMVEYNLQVSEHLIERTAT
LLSHNLRAVSGISTRDGTAIRLGTAAALAVWKSEHKQLESMMHLLMKRGADPNIGSVPFP
CLFFAVKAGDVDAVRVLLQHGASTNCRLSDKLGGLTPLHIASGIRCSEGVPIVELLLHAS
ANPNTPAHDEDISRATGTGGSESGASEKLVNQFKWMETGTQWVTQGLKFVEESGRTPLHI
ACDRDDNYREAREIANLLLDNGANPDVIWNGYSPLALAIASGNDFCIDELLHFGADGSLP
LTRGIGSALCVASNPKHEHRRTPEGRTRVIDKLVNAGANILVPVTYGSKELTGTVVDYAH
WMFFRDSRIAHTPYHALSVKVSHIHFRCVSCTNVFCFD

Nucleotide sequence

Length: 3,672

>Phmamm.CG.MTP2014.S5.g00239.02.t
TCTGGTGGTATAGATAAATGCACAGTGAATAAGGGCTGTGGCATCAGTTATGCCCTCTAA
TTCGCCTGTGGAGTATTCCACCAGCGACACTATTTTAAGATTGAGTACATCTTCAACACA
GTCAGTTGATGGTGATTCCAAAAATGTTGGAAAGTTTATTTGGCCATCAGGAGCAACTTA
CGAGGGTGAATTTTCATGTGGCTGTAGAAATGGCAAGGGAAGACAAACATGGCAGGATGG
ATCAGTGTATGAGGGTGACTTTGTAAAAGATATGCGACATGGCACAGGACAACACAAGTG
GCAAAATGGAGAGGTGTATGAAGGCAAGTTTTTCAAAGATCACCGACATGGTTTTGGTTG
TTACAAATGGCCAGATGGAACATCATATACAGGGACATTTTATCTTGACAAGAAAGAAGG
CTATGGCACATTTCAGTTTGCCAATGGTGACTTGTTTGAAGGTTTATACAAGGAAGATGA
AAGGTTTGGTCCAGGTGTTTTAACATACAGCAGTACGACCCCACAGTGCCAAGATGTTGG
CATATGGCATAGAGAAAAACTGTTTAGACTTTGTATTACTGCCAAAAATGTGTTTTCCAT
GAAAGAGCACCCTGAGTATGAATATTTCCCTGAAGAAAACCACGCTCAAATTGACATGTC
ATCTGATTTCAATAATTTGCACGACCAGTTGGGAAAAGAGGCAGCCTCCTACACATTTTT
AAGTGACAAGTTCAAATCTTTAATTGTGTCGGAAAACACAGCACTCCCGCCCGGCATAGA
AAGTTACTCAAAGGACTTCGAACATTTGCCACAAACTCTTCAACATAAGCAGGAGCTTGA
TAAAGCATTTTTTGGATCAAAATATGACCTGGTAAAAAATGATGATTTAGCAGTTTTGGT
GGCCACAAACAACACATCTATCCACATGCAAATTCAAAAGCATATTTACAAACACCGACT
AAATGCGGACTGTGTCAAGTTCAATGTGAAAGCAGTTATATCTGGCAAACGACTAAATAA
TTTTGGATCAAAGTCAGGAATTATTGAAGAAATGTCAATAGCCCTAATAGAACAGGCTGG
ATTGGGCAATTTCAGACAGGTCTATTCTATTTTGAAGTCGGGTTTGGTTGATGCAAATGT
TATGGATTGTAAAGGCAGTGGAGCCTTACTGGAAGCTGCCATTAATTGTCACCATAAAGT
TGTCAATCTGCTGCTGGATTGTGGTGCAAATGTTAATCAGGTGACTGATGAAGCTGTATC
AGCACTGAGTGCATGTCATGTGTTTTACTATCCAATTGACCACTTTAAGTACAACATTGC
TGAAAAGTATGTGCAAAATCACAGAAGATCAGAAGAAAAAGAGAAGCGTGGGAGGCCAAG
AAGTCCAGCCATAGACCTGCTCATGAGAAATAGACGTCGCAGTAGCAGCAGCGGAGAACG
CAAACGTCGCCGGTCGTCACAGTCACCAGACCGGGCATCTCCCGATTCTTTAATGAGCCG
TCGAAAGACTATCGCATCTCCCGAACGACTAAGAATCGCAGGAAGGGAAAAATTGACACC
AAGTCCTGTTAACATGGGCGAAACTGAAGCAATTGAGACATGCAAAAGTGATTTAAAAAT
AAAAAAAGTTTTCAGGGACATCATGTCTGCTAAATCACAAGGCCGGAGCAGTGAGGCGAA
AAGTTTCAACTTTGACCCTGCAGTGGATGATGTCAGTTCTGTGGATGCAAAAAGTCAGCA
TACCTCAAAAGATGATCTGACTTTTGAATCTAATGTCAACATGGTGGAATACAACTTACA
AGTCAGTGAGCATTTGATCGAACGAACTGCGACATTGTTGAGTCATAATCTACGTGCTGT
CAGTGGGATATCTACTCGTGATGGAACGGCGATTAGACTAGGGACGGCAGCTGCTCTTGC
TGTCTGGAAGTCTGAGCACAAACAGTTGGAATCAATGATGCATCTGCTCATGAAACGTGG
AGCTGACCCAAATATTGGTTCTGTTCCCTTTCCTTGCCTGTTTTTTGCTGTCAAAGCTGG
AGATGTGGATGCAGTGAGGGTTTTACTACAACATGGTGCATCTACCAACTGCCGTTTATC
TGACAAGCTTGGTGGTCTGACACCTTTACATATTGCTTCTGGCATCCGCTGTTCTGAGGG
AGTGCCAATAGTCGAGTTACTCTTACATGCAAGCGCAAATCCAAACACCCCAGCACATGA
TGAAGATATTTCACGCGCTACTGGAACTGGTGGATCAGAGAGTGGTGCATCTGAAAAACT
GGTGAATCAGTTCAAATGGATGGAAACTGGCACACAGTGGGTGACACAAGGCCTCAAATT
TGTGGAAGAATCAGGCAGAACCCCGTTACACATTGCTTGTGATCGCGATGACAACTACAG
GGAAGCAAGGGAAATTGCAAACCTCTTGCTTGACAATGGGGCAAATCCAGATGTGATTTG
GAATGGATATTCGCCATTGGCTCTGGCTATCGCATCAGGAAATGATTTCTGTATTGACGA
GCTGTTGCACTTTGGAGCAGATGGAAGCTTGCCACTAACAAGAGGCATTGGGAGTGCTTT
GTGTGTGGCTTCAAATCCAAAACATGAACACAGAAGAACTCCAGAAGGAAGAACCAGAGT
GATTGACAAACTTGTGAATGCTGGAGCTAACATCTTGGTTCCAGTAACATACGGCTCAAA
GGAACTGACTGGCACAGTTGTGGATTATGCACATTGGATGTTCTTTAGAGATTCAAGGAT
TGCTCATACCCCTTATCATGCTCTATCTGTCAAGGTAAGCCACATCCATTTCCGTTGTGT
TTCTTGTACAAATGTCTTTTGTTTTGATTAGGAACGTGAAACATACAATGCCAGAAAACG
TCTTTTATCTCACCTTGGTTCCTTGTTGCGCCACGCTGCAGTGCTGGTGGAACGCGAAAG
ATTGAAACAAGAGACACACTATGGAATAAAAAGCCAAAGTCCGAGCCGCGACGGGCGATT
TCTCTACACTGGAGCTGGGGCCGACATCGCAGTGACGAGCAATTTATCAACCCCACAGAC
TTATTCAAATCAAGAAGCGCACGGGCTTTCGTGGGGAAACACAGCAGTTAGTCGAGTCAG
TTTTGTTCGCCCTGGATACCATGAACAAACAGATGATAGAAGCGCCGGGGTTAAATCTGC
AATGGACTCGAGCAGAGAAGCAAAAGAAACAAGCAAGTCTGGGAAAAAGAAGAAACGGTT
ACAATCAGGTCCAATCAGAAAACCACTTTTCCGCTATTGTTACGACTGTGGACGTTCGGT
TGGTGTCCGTCTGACCTCGTGTTCCCGTTGCCACGAAGTTTTCTACTGTAGTCGTGCTTG
TAAATTGAAGGCTTGGGAGGAACGCCATAAGGATGAGTGTCTTCGCATTAAAGTGTACCG
CGAGCAAAGCCCTTTGCCAACTCCATCGGAAATAGCAGCCCTTTTCGCGGACCGACAATT
AGATGAAACCATCGAAAGAGCGAACTTGAAAACAACTTCAATCGTGGACACAATCCTTAA
CCAACACTTGACGGTTGCCGAGGAGAACGCGCTTATTCTCTCGCGAAAACCTATGTTCGG
TTCTCGGGGTACTACCAATCGCTGGACGCGTTCCCGAGGCCGTGACAGCTCCAGCAGAAG
GGCTAAGAAGGC

InterProScan

SMART	MORN (IPR003409) - T[47-68] 0.0014 - T[70-91] 0.0054 - T[93-114] 2.0E-4 - T[116-137] 0.11 - T[139-160] 19.0
Pfam	MORN (IPR003409) - T[49-71] 0.0021 - T[72-93] 0.0025 - T[95-116] 3.2E-5 - T[118-139] 1.6E-4 - T[141-160] 3.7
Gene3D	Ankyrin_rpt-contain_sf (IPR036770) - T[325-443] 5.1E-9 - T[580-735] 4.6E-15 - T[755-900] 4.0E-14
ProSiteProfiles	Ankyrin_rpt-contain_dom (IPR020683) - T[339-411] 10.418 - T[662-836] 17.475
SUPERFAMILY	Ankyrin_rpt-contain_sf (IPR036770) - T[344-413] 2.02E-8 - T[639-839] 2.06E-23
CDD	Ankyrin_rpt-contain_dom (IPR020683) - T[351-411] 8.6486E-7 - T[661-831] 7.65234E-19
ProSiteProfiles	Ankyrin_rpt (IPR002110) - T[373-405] 9.404 - T[693-728] 9.538 - T[773-810] 10.686 - T[810-836] 8.736
SMART	Ankyrin_rpt (IPR002110) - T[373-402] 0.11 - T[621-654] 430.0 - T[657-686] 7.5 - T[693-725] 36.0 - T[773-807] 4.2E-4 - T[810-841] 1.5 - T[843-882] 4500.0
Pfam	Ankyrin_rpt-contain_dom (IPR020683) - T[635-725] 4.2E-7 - T[771-836] 1.2E-6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
ANKY1_HUMAN	38.342 %	278	6.32E-80
MORN1_HUMAN	38.017 %	84	1.02E-16
RSPH1_HUMAN	33.884 %	84.7	1.01E-17

Transcript Model

Transcript Id

Possible name(s)

Gene model

Location

Amino acid sequence

Nucleotide sequence