- Transcript 'Phfumi.CG.MTP2014.S8...' >
- Transcript 'Phmamm.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S60.g02167.01.t
Possible name(s)
LARP6; LARP7; SSB
Gene model
Location
S60 [117,902 / 122,589]
Amino acid sequence
Length: 581
>Phmamm.CG.MTP2014.S60.g02167.01.p
MQAAAGPTYYTDAGKFVQPMSTAPYMMPPCVGQQGGVTWVQQYVNGSPMLVPVYTVTPSQ
PMQYYQQPVYFNTQYRDNNAENHYQQGVCGHQMPLAGPESQINSTRTGVIHKVTPSKRSS
VSSDVSGSGFLPSNDQRIKTTSQLSNARQIYATPKREILRYESADSGIADSPPSVASVVW
SGDESLEDSDSVDSKNGRISENGSESGTKDNDEDCWTVQDDVRYWARLGQTGPNRYQSSA
IAKQVEYYLSDDYLVKDKYLLRQIRCKKDGYVSIKLITSFKKVKKLTRDWQVVRSAIARN
SSDIVVSPEGLRIRRRTKLSDNLRKPRLLTSVLVIRLPDDYNSVEKVTSLFRNFGEISFV
RLLRANKEVPADLRNYATQVHDIGTTLCGVIDFECSEDALNAVRIVKHFQKQNECPEDKK
SPEDEENTIPMLQKYKDALEGLPSLGDMRLALLGPRVRRTLYRQDRSQDLPEEQVQDTGS
EASDDAFTSNEVKLPDMKRRSSADDGLKVENRLLPSHDLTKEVCSSSLPKNFGASCSWLH
QRRTAALSHPQQAATRLFHVIRSPRGPDNTAGFNLKRTVPK
Nucleotide sequence
Length: 1,746
>Phmamm.CG.MTP2014.S60.g02167.01.t
ATGCAAGCCGCTGCAGGTCCTACTTACTACACAGACGCTGGAAAGTTTGTCCAACCGATG
TCCACCGCTCCTTATATGATGCCCCCATGTGTGGGTCAACAAGGGGGTGTTACTTGGGTT
CAGCAATACGTCAACGGATCACCCATGTTGGTTCCAGTTTATACAGTCACGCCATCCCAG
CCTATGCAGTACTACCAACAGCCGGTCTATTTCAACACACAATATCGTGACAACAATGCC
GAAAACCATTATCAACAAGGAGTCTGTGGACACCAGATGCCTCTGGCTGGTCCTGAAAGC
CAAATAAATTCAACCCGCACTGGAGTCATCCACAAGGTGACGCCAAGCAAACGCTCTTCA
GTCTCCAGTGATGTGTCCGGCTCCGGGTTCTTGCCCTCCAACGACCAACGCATCAAAACC
ACTTCGCAGCTAAGCAACGCAAGACAAATCTACGCCACACCGAAACGGGAAATTCTGAGA
TATGAGAGCGCCGACAGTGGAATCGCTGACTCACCGCCATCGGTTGCCTCGGTCGTTTGG
AGCGGAGACGAATCGCTTGAAGATTCTGATAGCGTGGACTCAAAGAACGGACGAATTAGC
GAGAACGGCTCAGAATCAGGCACAAAGGATAACGATGAGGACTGTTGGACCGTTCAGGAT
GACGTCAGATACTGGGCTCGCTTGGGACAAACCGGCCCCAACCGGTACCAGTCCAGCGCT
ATTGCCAAACAGGTCGAATACTACCTCTCCGACGACTATCTGGTCAAGGACAAGTATCTC
CTACGTCAGATCCGCTGCAAGAAGGACGGATACGTCAGCATTAAACTCATTACGTCATTC
AAGAAAGTGAAGAAACTGACACGTGACTGGCAGGTCGTGCGCAGCGCCATTGCGCGGAAT
TCATCTGATATTGTCGTGAGTCCCGAAGGATTGAGGATTCGTCGACGGACAAAGCTTTCT
GACAACTTGCGAAAGCCGAGACTTCTTACCAGTGTATTGGTGATTCGACTGCCCGACGAT
TACAATTCCGTGGAAAAGGTAACTTCTCTTTTCCGCAACTTTGGCGAAATCAGCTTCGTG
AGACTTCTGCGTGCCAACAAGGAAGTCCCCGCCGACCTCAGGAATTACGCTACTCAAGTT
CACGACATAGGTACCACATTGTGTGGTGTGATTGACTTTGAGTGTTCGGAGGATGCCCTC
AACGCTGTGCGCATTGTTAAGCATTTCCAGAAACAAAACGAATGCCCGGAAGACAAAAAG
TCGCCGGAGGATGAAGAAAACACAATCCCGATGCTACAGAAATACAAAGATGCCCTTGAA
GGCTTGCCTTCTCTCGGTGACATGCGGCTTGCACTCCTTGGTCCACGAGTACGAAGGACC
CTGTACAGACAAGACAGAAGCCAAGATCTTCCTGAAGAGCAAGTCCAAGACACCGGAAGT
GAAGCATCCGATGACGCTTTTACCTCCAACGAAGTGAAACTCCCTGACATGAAACGCCGC
TCTAGTGCCGACGACGGTCTGAAAGTTGAAAACCGCCTTTTGCCAAGCCATGACCTTACA
AAAGAAGTTTGCAGCAGTTCGCTCCCAAAGAACTTTGGCGCTTCCTGCTCGTGGCTCCAC
CAAAGACGCACCGCAGCCCTAAGCCACCCGCAACAGGCTGCGACGAGACTATTCCACGTG
ATCCGCTCACCTAGAGGCCCCGACAACACAGCGGGTTTCAATTTGAAACGCACAGTGCCA
AAATAA
| ProSiteProfiles |
La_HTH (IPR006630) - T[231-323] 21.505 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[235-324] 1.5E-23 |
| SMART |
La_HTH (IPR006630) - T[235-316] 1.1E-24 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[237-320] 3.17E-20 |
| Pfam |
La_HTH (IPR006630) - T[241-297] 4.7E-20 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[323-406] 5.43E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LARP6_HUMAN | 35.393 % | 110 | 7.49E-26 |