Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S663.g11045.01.t

Possible name(s)

AC113404.3; RAP1A; RAP1B

Gene model

Phmamm.CG.MTP2014.S663.g11045

Location

S663 [53,322 / 56,898]

Sequences

Amino acid sequence

Length: 184

>Phmamm.CG.MTP2014.S663.g11045.01.p
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEAENQQCMLEILDTAG
TEQFTAMRDLYMKNGQGFVLVYSITSQASFNDLSDLREQILRVKDTDEVPMILVGNKCDL
EDERIVTREQGEQLAKEWRSSFLETSAKSKINVENIFFDLVKQINKKTPEPKRKKKKSSG
CALL

Nucleotide sequence

Length: 555

>Phmamm.CG.MTP2014.S663.g11045.01.t
ATGAGAGAGTACAAGCTTGTTGTTTTGGGATCTGGTGGTGTGGGCAAGAGTGCCTTGACT
GTACAGTTTGTCCAAGGAATATTCGTTGAAAAGTACGACCCCACCATTGAGGACAGTTAC
AGAAAGCAAGTGGAAGCAGAAAATCAACAATGCATGTTGGAAATTCTTGACACAGCTGGA
ACGGAACAATTCACAGCAATGAGGGATTTGTACATGAAAAATGGCCAGGGATTCGTGCTT
GTCTACAGCATTACCTCACAGGCATCATTTAATGACTTGTCGGATTTGCGAGAACAAATT
CTGCGAGTAAAGGACACAGATGAGGTGCCCATGATTCTTGTGGGAAACAAATGTGATTTG
GAAGATGAAAGAATTGTGACACGAGAGCAGGGTGAACAACTTGCAAAGGAATGGCGTAGC
TCCTTTCTGGAAACTTCTGCAAAATCAAAAATCAATGTTGAAAATATCTTTTTCGACCTT
GTCAAGCAAATCAATAAAAAAACTCCCGAGCCAAAGAGAAAGAAAAAGAAGAGCTCTGGA
TGTGCCCTCTTGTAA

InterProScan

TIGRFAM	Small_GTP-bd_dom (IPR005225) - T[1-157] 7.0E-32
ProSiteProfiles	Small_GTPase_Ras (IPR020849) - T[1-184] 45.064
PANTHER	Small_GTPase_Ras (IPR020849) - T[1-184] 4.5E-104
SUPERFAMILY	P-loop_NTPase (IPR027417) - T[2-164] 1.96E-53
Pfam	Small_GTPase (IPR001806) - T[5-165] 3.0E-58

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RAP1B_HUMAN	82.162 %	315	1.44E-111
RAP1A_HUMAN	81.622 %	300	8.83E-106
RP1BL_HUMAN	81.081 %	310	1.48E-109