- Region 'REG00001576' >
- Transcript 'Boleac.CG.SB_v3.S233...' >
- Transcript 'Phmamm.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S672.g11119.01.t
Possible name(s)
RORA; RORB; RORC
Gene model
Location
S672 [50,818 / 57,998]
>Phmamm.CG.MTP2014.S672.g11119.01.p
MNNIEFSDRGMATSRHGDLLRCRDYTDAPFAPVLTQHPSPIDMLSPNYGNLHQQQIQAAE
HMTATTASYQALSYAHQEHAHLQHGSFVPLSEHEPTENIQPGLNSRAYAENLVNFQGYGN
HASGVDAQGENGWIESNQVAPTRPSYEELRWRDSYRNVPARAQIEIIPCKVCGDKSSGIH
YGVITCEGCKGFFRRSQQNNYAYTCPRHGNCIIDRTNRNRCQHCRLQKCLRAGMSKDAVK
FGRMSKKQRDRLYLEVLKQQQIRASQSQEPEVYNTNTNIPTTHSSHAVPNPSPYYTGSDV
ANGDVISPFNHSPPSAQSTPTSEITVKTEPGLESRGSSLTPSPTNKYPDHNETNKPFPHG
TMEDFPYPTIEHLVRNVCEAYYKTCQYTLAELQAFMQQTSSNDDLMRYNSMSQESMWGLC
AGKLTMAIQHVVEFAKHIHGFMTLDQHDQIILLKAGCLEIVMARMSRAFNSNSSTVFFDD
KYTPIETFRKLGCDDLVSGLFQLSHDLNDLKLTEDEIALFTCAVLITGDRRGLREPARLN
ALQSVILGALQNRFRETHMDNSSIVRQLLVHMNTLRELSDLHSKHFFRARQELHNIDASL
PPLYKELFLCDDSALHPNNHMGRYHNPRDLHRDSRGANHMTDDDVTPVESISPQYLDSKN
SSEVGSNASSGSAVDSGCVLLAGSTGPDLFQPGTSRSSSTSSVSSSGTAPLGNLSCEEIS
PMLPDTKPLDIVQGNQLNLDDSLQRRRLAEAERLLEAAMHEQQASMAQPTSYPLQMTMLA
HSQQANSIHRHTAAGDAALGGIPHLSI
>Phmamm.CG.MTP2014.S672.g11119.01.t
ATGAACAACATTGAGTTTTCTGACCGTGGAATGGCTACCTCACGACACGGTGACCTTCTC
AGGTGCCGCGACTACACCGACGCTCCGTTTGCCCCAGTTCTTACTCAGCACCCTTCGCCT
ATCGATATGTTATCGCCCAATTACGGCAATCTCCATCAGCAGCAGATACAAGCAGCGGAG
CACATGACCGCCACCACTGCATCCTACCAAGCCTTGTCTTACGCTCACCAAGAGCACGCA
CATCTTCAGCATGGGTCATTCGTACCCTTAAGCGAACACGAGCCTACGGAAAATATTCAA
CCTGGTTTGAACAGTCGCGCTTACGCCGAAAACTTGGTGAACTTTCAGGGTTACGGTAAC
CACGCTAGTGGCGTTGATGCACAGGGCGAAAACGGCTGGATTGAGAGCAACCAAGTGGCC
CCAACTCGGCCCAGTTATGAAGAATTAAGATGGAGGGATTCATACAGAAATGTTCCGGCG
CGTGCCCAAATCGAAATTATCCCCTGCAAAGTATGTGGAGACAAATCATCTGGAATTCAT
TACGGCGTCATAACATGTGAAGGATGCAAGGGTTTCTTTCGCCGCAGTCAACAGAACAAT
TATGCCTATACCTGCCCTCGGCATGGAAACTGCATTATTGACCGCACCAACAGAAATAGA
TGCCAACATTGCCGATTGCAGAAGTGTCTTCGCGCTGGAATGTCAAAAGATGCCGTGAAG
TTTGGTCGAATGTCGAAGAAACAACGAGACCGCTTGTACCTGGAAGTGCTGAAGCAGCAG
CAGATTCGTGCGAGTCAATCTCAAGAGCCTGAGGTCTATAACACAAACACCAACATACCC
ACAACACACAGTTCCCACGCTGTGCCCAACCCTTCTCCATACTACACCGGTTCTGACGTC
GCTAACGGTGACGTCATATCGCCATTCAACCATTCACCGCCCTCCGCTCAATCCACGCCA
ACATCCGAGATCACAGTGAAAACCGAACCGGGTTTAGAGTCACGTGGTTCCAGCCTAACT
CCGTCACCCACTAACAAGTATCCAGACCACAACGAAACGAACAAACCGTTCCCTCATGGC
ACAATGGAAGATTTCCCTTATCCAACGATAGAACATTTAGTTCGCAATGTATGTGAGGCT
TATTACAAGACCTGCCAATACACACTCGCCGAACTGCAGGCTTTTATGCAACAAACTTCG
TCCAACGACGACCTGATGCGCTACAATTCCATGAGCCAAGAATCAATGTGGGGTCTGTGT
GCGGGCAAGTTGACAATGGCCATTCAGCATGTTGTCGAGTTCGCCAAACACATTCACGGC
TTTATGACCCTCGACCAGCATGATCAGATTATTCTCCTCAAAGCAGGTTGTCTCGAAATA
GTGATGGCTCGCATGTCTCGAGCATTTAACAGCAACAGCTCAACTGTGTTCTTTGATGAC
AAATATACGCCTATAGAAACCTTCAGAAAATTGGGCTGCGATGATTTGGTGTCAGGCTTA
TTTCAGCTTTCACATGACCTGAACGACTTGAAACTGACTGAAGACGAAATTGCTCTTTTC
ACTTGCGCTGTCCTGATAACTGGAGATCGTCGAGGGCTCCGTGAGCCAGCCAGATTAAAT
GCTTTGCAGTCTGTCATACTTGGTGCCCTGCAAAACCGATTTCGTGAAACTCACATGGAC
AACTCTTCCATCGTTCGTCAGCTTTTGGTTCACATGAACACTCTGAGGGAATTGTCAGAC
CTCCATTCCAAGCACTTCTTCCGAGCACGCCAGGAACTTCACAACATTGATGCCAGTCTT
CCTCCACTGTACAAGGAACTCTTTCTCTGCGACGACTCGGCCCTGCACCCAAACAACCAC
ATGGGGCGCTATCACAACCCACGTGACCTTCACAGAGACAGCAGAGGCGCAAATCACATG
ACCGACGATGACGTAACCCCGGTAGAATCGATTTCACCTCAGTATTTGGATTCGAAGAAC
TCGTCCGAAGTGGGGTCAAATGCTAGTTCCGGATCGGCAGTGGATAGTGGCTGTGTGTTG
CTGGCAGGCTCCACCGGTCCGGATTTATTTCAACCGGGCACGAGTCGTAGTTCATCGACG
TCTTCCGTAAGCAGCAGTGGAACCGCGCCACTGGGCAACCTGAGCTGTGAAGAGATATCA
CCGATGCTGCCCGACACGAAACCTTTGGACATCGTGCAAGGCAACCAGCTCAACTTGGAT
GACTCTCTGCAACGGCGCCGTCTAGCGGAGGCGGAAAGACTCCTTGAAGCTGCAATGCAC
GAGCAACAAGCTTCCATGGCGCAGCCTACCTCCTATCCCCTGCAAATGACTATGCTTGCG
CACAGTCAGCAGGCCAACAGCATTCATCGCCATACTGCAGCCGGAGATGCTGCACTTGGG
GGAATTCCCCACCTTTCCATATGA
Gene3D |
Znf_NHR/GATA (IPR013088) - T[161-270] 1.0E-34 |
ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[166-241] 19.89 |
SMART |
Znf_hrmn_rcpt (IPR001628) - T[166-237] 2.9E-39 |
Pfam |
Znf_hrmn_rcpt (IPR001628) - T[168-236] 4.4E-32 |
ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[169-195] . |
PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[169-185] 6.6E-18 - T[185-200] 6.6E-18 - T[218-226] 6.6E-18 - T[226-234] 6.6E-18 |
PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[230-240] 1.2E-19 - T[423-444] 1.2E-19 - T[444-460] 1.2E-19 - T[510-525] 1.2E-19 - T[567-584] 1.2E-19 |
SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[368-608] 1.02E-55 |
ProSiteProfiles |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[369-608] 37.73 |
PRINTS |
ThyrH_rcpt (IPR001728) - T[420-441] 8.1E-8 - T[446-465] 8.1E-8 - T[510-532] 8.1E-8 |
SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[422-579] 7.3E-24 |
Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[426-590] 9.5E-19 |
Protein Name | Identity | Bit Score | e-value |
---|---|---|---|
RORG_HUMAN | 44.581 % | 354 | 2.59E-113 |
RORB_HUMAN | 46.882 % | 382 | 6.41E-125 |
RORA_HUMAN | 44.348 % | 379 | 5.52E-123 |