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  1. Region 'REG00001576'
  2. Transcript 'Boleac.CG.SB_v3.S233...'
  3. Transcript 'Phmamm.CG.MTP2014.S6...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S672.g11119.01.t

Possible name(s)

RORA; RORB; RORC

Location

S672 [50,818 / 57,998]

Sequences

Amino acid sequence

Length: 807

>Phmamm.CG.MTP2014.S672.g11119.01.p
MNNIEFSDRGMATSRHGDLLRCRDYTDAPFAPVLTQHPSPIDMLSPNYGNLHQQQIQAAE
HMTATTASYQALSYAHQEHAHLQHGSFVPLSEHEPTENIQPGLNSRAYAENLVNFQGYGN
HASGVDAQGENGWIESNQVAPTRPSYEELRWRDSYRNVPARAQIEIIPCKVCGDKSSGIH
YGVITCEGCKGFFRRSQQNNYAYTCPRHGNCIIDRTNRNRCQHCRLQKCLRAGMSKDAVK
FGRMSKKQRDRLYLEVLKQQQIRASQSQEPEVYNTNTNIPTTHSSHAVPNPSPYYTGSDV
ANGDVISPFNHSPPSAQSTPTSEITVKTEPGLESRGSSLTPSPTNKYPDHNETNKPFPHG
TMEDFPYPTIEHLVRNVCEAYYKTCQYTLAELQAFMQQTSSNDDLMRYNSMSQESMWGLC
AGKLTMAIQHVVEFAKHIHGFMTLDQHDQIILLKAGCLEIVMARMSRAFNSNSSTVFFDD
KYTPIETFRKLGCDDLVSGLFQLSHDLNDLKLTEDEIALFTCAVLITGDRRGLREPARLN
ALQSVILGALQNRFRETHMDNSSIVRQLLVHMNTLRELSDLHSKHFFRARQELHNIDASL
PPLYKELFLCDDSALHPNNHMGRYHNPRDLHRDSRGANHMTDDDVTPVESISPQYLDSKN
SSEVGSNASSGSAVDSGCVLLAGSTGPDLFQPGTSRSSSTSSVSSSGTAPLGNLSCEEIS
PMLPDTKPLDIVQGNQLNLDDSLQRRRLAEAERLLEAAMHEQQASMAQPTSYPLQMTMLA
HSQQANSIHRHTAAGDAALGGIPHLSI

Nucleotide sequence

Length: 2,424

>Phmamm.CG.MTP2014.S672.g11119.01.t
ATGAACAACATTGAGTTTTCTGACCGTGGAATGGCTACCTCACGACACGGTGACCTTCTC
AGGTGCCGCGACTACACCGACGCTCCGTTTGCCCCAGTTCTTACTCAGCACCCTTCGCCT
ATCGATATGTTATCGCCCAATTACGGCAATCTCCATCAGCAGCAGATACAAGCAGCGGAG
CACATGACCGCCACCACTGCATCCTACCAAGCCTTGTCTTACGCTCACCAAGAGCACGCA
CATCTTCAGCATGGGTCATTCGTACCCTTAAGCGAACACGAGCCTACGGAAAATATTCAA
CCTGGTTTGAACAGTCGCGCTTACGCCGAAAACTTGGTGAACTTTCAGGGTTACGGTAAC
CACGCTAGTGGCGTTGATGCACAGGGCGAAAACGGCTGGATTGAGAGCAACCAAGTGGCC
CCAACTCGGCCCAGTTATGAAGAATTAAGATGGAGGGATTCATACAGAAATGTTCCGGCG
CGTGCCCAAATCGAAATTATCCCCTGCAAAGTATGTGGAGACAAATCATCTGGAATTCAT
TACGGCGTCATAACATGTGAAGGATGCAAGGGTTTCTTTCGCCGCAGTCAACAGAACAAT
TATGCCTATACCTGCCCTCGGCATGGAAACTGCATTATTGACCGCACCAACAGAAATAGA
TGCCAACATTGCCGATTGCAGAAGTGTCTTCGCGCTGGAATGTCAAAAGATGCCGTGAAG
TTTGGTCGAATGTCGAAGAAACAACGAGACCGCTTGTACCTGGAAGTGCTGAAGCAGCAG
CAGATTCGTGCGAGTCAATCTCAAGAGCCTGAGGTCTATAACACAAACACCAACATACCC
ACAACACACAGTTCCCACGCTGTGCCCAACCCTTCTCCATACTACACCGGTTCTGACGTC
GCTAACGGTGACGTCATATCGCCATTCAACCATTCACCGCCCTCCGCTCAATCCACGCCA
ACATCCGAGATCACAGTGAAAACCGAACCGGGTTTAGAGTCACGTGGTTCCAGCCTAACT
CCGTCACCCACTAACAAGTATCCAGACCACAACGAAACGAACAAACCGTTCCCTCATGGC
ACAATGGAAGATTTCCCTTATCCAACGATAGAACATTTAGTTCGCAATGTATGTGAGGCT
TATTACAAGACCTGCCAATACACACTCGCCGAACTGCAGGCTTTTATGCAACAAACTTCG
TCCAACGACGACCTGATGCGCTACAATTCCATGAGCCAAGAATCAATGTGGGGTCTGTGT
GCGGGCAAGTTGACAATGGCCATTCAGCATGTTGTCGAGTTCGCCAAACACATTCACGGC
TTTATGACCCTCGACCAGCATGATCAGATTATTCTCCTCAAAGCAGGTTGTCTCGAAATA
GTGATGGCTCGCATGTCTCGAGCATTTAACAGCAACAGCTCAACTGTGTTCTTTGATGAC
AAATATACGCCTATAGAAACCTTCAGAAAATTGGGCTGCGATGATTTGGTGTCAGGCTTA
TTTCAGCTTTCACATGACCTGAACGACTTGAAACTGACTGAAGACGAAATTGCTCTTTTC
ACTTGCGCTGTCCTGATAACTGGAGATCGTCGAGGGCTCCGTGAGCCAGCCAGATTAAAT
GCTTTGCAGTCTGTCATACTTGGTGCCCTGCAAAACCGATTTCGTGAAACTCACATGGAC
AACTCTTCCATCGTTCGTCAGCTTTTGGTTCACATGAACACTCTGAGGGAATTGTCAGAC
CTCCATTCCAAGCACTTCTTCCGAGCACGCCAGGAACTTCACAACATTGATGCCAGTCTT
CCTCCACTGTACAAGGAACTCTTTCTCTGCGACGACTCGGCCCTGCACCCAAACAACCAC
ATGGGGCGCTATCACAACCCACGTGACCTTCACAGAGACAGCAGAGGCGCAAATCACATG
ACCGACGATGACGTAACCCCGGTAGAATCGATTTCACCTCAGTATTTGGATTCGAAGAAC
TCGTCCGAAGTGGGGTCAAATGCTAGTTCCGGATCGGCAGTGGATAGTGGCTGTGTGTTG
CTGGCAGGCTCCACCGGTCCGGATTTATTTCAACCGGGCACGAGTCGTAGTTCATCGACG
TCTTCCGTAAGCAGCAGTGGAACCGCGCCACTGGGCAACCTGAGCTGTGAAGAGATATCA
CCGATGCTGCCCGACACGAAACCTTTGGACATCGTGCAAGGCAACCAGCTCAACTTGGAT
GACTCTCTGCAACGGCGCCGTCTAGCGGAGGCGGAAAGACTCCTTGAAGCTGCAATGCAC
GAGCAACAAGCTTCCATGGCGCAGCCTACCTCCTATCCCCTGCAAATGACTATGCTTGCG
CACAGTCAGCAGGCCAACAGCATTCATCGCCATACTGCAGCCGGAGATGCTGCACTTGGG
GGAATTCCCCACCTTTCCATATGA

InterProScan

Gene3D
Znf_NHR/GATA (IPR013088) - T[161-270] 1.0E-34
ProSiteProfiles
Znf_hrmn_rcpt (IPR001628) - T[166-241] 19.89
SMART
Znf_hrmn_rcpt (IPR001628) - T[166-237] 2.9E-39
Pfam
Znf_hrmn_rcpt (IPR001628) - T[168-236] 4.4E-32
ProSitePatterns
Znf_hrmn_rcpt (IPR001628) - T[169-195] .
PRINTS
Znf_hrmn_rcpt (IPR001628) - T[169-185] 6.6E-18 - T[185-200] 6.6E-18 - T[218-226] 6.6E-18 - T[226-234] 6.6E-18
PRINTS
Nuclear_hrmn_rcpt (IPR001723) - T[230-240] 1.2E-19 - T[423-444] 1.2E-19 - T[444-460] 1.2E-19 - T[510-525] 1.2E-19 - T[567-584] 1.2E-19
SUPERFAMILY
NHR_like_dom_sf (IPR035500) - T[368-608] 1.02E-55
ProSiteProfiles
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[369-608] 37.73
PRINTS
ThyrH_rcpt (IPR001728) - T[420-441] 8.1E-8 - T[446-465] 8.1E-8 - T[510-532] 8.1E-8
SMART
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[422-579] 7.3E-24
Pfam
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[426-590] 9.5E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RORG_HUMAN 44.581 % 354 2.59E-113
RORB_HUMAN 46.882 % 382 6.41E-125
RORA_HUMAN 44.348 % 379 5.52E-123





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