- Clone 'citb103e22' >
- Region 'REG00001510' >
- Transcript 'KH2012:KH.C10.208.v1...' >
- Region 'REG00001379' >
- Transcript 'Phmamm.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S688.g11235.01.t
Possible name(s)
NLE1; PEX7; WDR12
Gene model
Location
S688 [26,046 / 30,139]
Amino acid sequence
Length: 393
>Phmamm.CG.MTP2014.S688.g11235.01.p
MAQIQVKFFTQQKKYEVSEAPFSVLGSVSGSDLCDLINKLRLEQDDESEKKSFDFIVNGE
FLRSSLLQHIEEKGLSVESVLPVEYFEAKESPELKSTLSENDWISGIQLNKQHILTGEND
SNEKLASTSQDQKIVLWDFDKEKNSLRPKFSCKGHSRSVESIAVNSKHETFASGSWDCTI
KLWSASYVPEKGGLEDEQISSASKKKRAKLEQTGISRVPQMTVAGHTEVVSGLVWVDNNQ
LCSGSWDHTLRLWDMSEGKETSQLRGTKAILSVDYSKLNQTLVTGNTDRHVRLWDPRSTG
SVVKSNLTSHHGWVTCVKWCKTNSNLLVTGSLDNLVKMWDIRSTKTPLFDLTAHTDKVMC
LDWHKSETIASGGADNKVFLFSAHDGSLQQTLS
Nucleotide sequence
Length: 1,182
>Phmamm.CG.MTP2014.S688.g11235.01.t
ATGGCACAAATTCAAGTGAAATTTTTCACGCAGCAAAAGAAATATGAAGTCAGTGAAGCT
CCATTTTCTGTGCTGGGTTCAGTATCTGGAAGCGATTTGTGTGATTTAATAAACAAATTG
AGACTTGAACAGGACGATGAATCAGAAAAGAAATCTTTTGATTTTATTGTTAATGGAGAG
TTTCTGAGATCTTCCCTTTTGCAACATATAGAGGAAAAGGGCCTTTCTGTTGAATCTGTT
CTCCCAGTTGAATATTTTGAGGCCAAAGAATCCCCTGAGCTGAAGTCAACATTGTCAGAA
AATGATTGGATAAGTGGAATACAACTAAACAAACAACATATTTTAACAGGAGAGAATGAT
TCGAATGAAAAACTTGCAAGCACATCTCAAGATCAAAAGATTGTATTGTGGGATTTTGAC
AAGGAAAAAAACTCCCTGAGACCAAAATTTTCTTGCAAAGGGCATTCTCGAAGTGTAGAG
TCTATTGCTGTCAACTCAAAACACGAAACATTTGCATCAGGCTCATGGGATTGTACGATA
AAACTTTGGTCGGCATCTTATGTACCAGAAAAAGGTGGACTAGAAGATGAACAGATTTCT
TCTGCAAGCAAAAAGAAACGTGCAAAGTTAGAACAAACTGGAATATCCAGGGTTCCCCAA
ATGACAGTTGCTGGCCACACTGAGGTTGTGTCTGGTTTAGTTTGGGTTGACAACAATCAG
CTGTGCAGTGGCTCATGGGATCATACACTGAGATTGTGGGACATGTCAGAAGGAAAAGAA
ACATCACAACTGCGAGGTACCAAGGCGATTTTATCAGTGGATTATTCAAAACTGAACCAA
ACCTTAGTAACTGGAAACACTGACAGACATGTGAGATTGTGGGACCCAAGAAGTACAGGT
TCTGTAGTGAAAAGCAACCTTACATCTCACCATGGTTGGGTGACTTGTGTAAAGTGGTGC
AAAACAAACAGTAATCTGTTGGTCACTGGGTCATTGGATAATCTTGTAAAGATGTGGGAT
ATCAGAAGCACAAAAACACCCCTCTTCGATCTGACAGCACATACAGACAAAGTGATGTGT
CTAGACTGGCACAAATCTGAAACAATTGCTAGTGGTGGAGCTGACAACAAAGTTTTTCTT
TTTTCTGCTCACGATGGTTCGCTTCAGCAAACGTTATCATAA
| Hamap |
WDR12/Ytm1 (IPR028599) - T[2-385] 25.636 |
| Pfam |
NLE (IPR012972) - T[4-70] 4.3E-15 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[85-192] 7.4E-15 - T[194-267] 5.5E-12 - T[268-393] 5.0E-32 |
| SMART |
WD40_repeat (IPR001680) - T[91-138] 0.34 - T[145-184] 1.1E-7 - T[216-254] 1.1E-6 - T[257-295] 5.7E-4 - T[300-340] 5.1E-8 - T[344-382] 1.3E-6 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[120-392] 4.58E-55 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[125-139] . - T[241-255] . - T[327-341] . |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[125-393] 32.905 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[125-139] 1.0E-7 - T[241-255] 1.0E-7 - T[327-341] 1.0E-7 |
| Pfam |
WD40_repeat (IPR001680) - T[149-184] 9.9E-6 - T[219-254] 4.2E-5 - T[259-295] 0.0012 - T[307-340] 3.2E-4 - T[347-381] 0.021 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[152-184] 11.544 - T[223-263] 12.747 - T[270-304] 10.174 - T[307-349] 13.215 - T[351-391] 8.871 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PEX7_HUMAN | 33.898 % | 87 | 4.01E-19 |
| WDR12_HUMAN | 40.241 % | 317 | 2.57E-105 |
| RACK1_HUMAN | 34.392 % | 90.9 | 1.86E-20 |