- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Phmamm.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S691.g11254.01.t
Possible name(s)
LRP4; LRP6
Gene model
Location
S691 [25,819 / 52,122]
Amino acid sequence
Length: 688
>Phmamm.CG.MTP2014.S691.g11254.01.p
GSDEKSCKKRSCVEGKEFKCSDGDCVDTAFLCDGDFDCRDGSDEECEAPADPVVIPTNHS
FTCKSEDFSCSGGDTAVLGDEIDVCIPLDYVCDGEDDCANGVDERDCAHPCTSDQHRCAN
GQCIALHNHCDGSDDCGDGSDELHCEDQEPCVEGEFRCTSGMCISHLWRCDGDSDCNDSS
DEENCERLDATCDEDQFHCLPSNRCIRSSWRCDGTADCDDKSDEVNCDVCESGQYRCLSG
DCIAISKVCNKKPDCPDGSDERPVHSCNGSIILGSNFTSCEDRNGGCEHRCKETPHGSLC
TCRKGFQIAPDMRTCIDIDECRVEGSCSQICNNTMGSFVCSCVDGYILRPNGRTCKASGP
KPALLFTNRIDIQKMLPDRSEYKPILRDLENAIGLDYHIELGLMFWTDVSLDRIMRSYMN
GSGQEQVVSSGLESPAGVAVDWVHNLLYWTDSGTSRIEVSRLNGSYRKVLVWDNLQKPRA
IALHPLESLMVWTDWGETPCLESAAMDGSMRKSLASRNLHWPNGLTIDYTRNHIYWADAK
YHIIEKINLDGGDRRTVISSGLPHPFGVTIFEDRLYWTDWHTRSVNSVNKFTGSGVQTIS
SRLHFPMDIQTYHPLRQPKGPNRCKHSNCSHLCLPHPGGISCACPTGFRRVSDIQCAENI
ERFLVFTRRTDIRRISFDGAGRADSVIP
Nucleotide sequence
Length: 2,068
>Phmamm.CG.MTP2014.S691.g11254.01.t
ATGGAAGCGACGAAAAAAGTTGCAAGAAACGATCTTGCGTGGAGGGCAAGGAGTTTAAAT
GTTCAGACGGAGATTGCGTGGACACAGCGTTTCTATGCGACGGTGATTTTGATTGCAGAG
ATGGTTCCGATGAAGAATGCGAAGCCCCAGCTGATCCTGTTGTTATTCCAACCAACCACA
GTTTTACGTGCAAAAGTGAGGATTTCTCGTGTTCTGGGGGTGATACAGCGGTACTGGGGG
ATGAAATTGACGTCTGCATTCCACTGGATTACGTGTGTGATGGGGAGGATGACTGCGCGA
ACGGAGTGGATGAGAGGGACTGCGCTCATCCGTGTACGTCGGATCAACACCGTTGCGCTA
ATGGACAATGCATCGCGCTCCATAATCACTGTGACGGAAGTGACGACTGCGGGGACGGAA
GTGACGAATTGCATTGTGAAGACCAGGAGCCTTGTGTTGAGGGAGAGTTCCGATGCACCA
GTGGAATGTGTATCAGTCATCTGTGGAGGTGTGATGGTGATAGTGATTGCAACGATTCGT
CAGATGAAGAAAACTGTGAACGTTTGGACGCGACTTGTGACGAAGATCAGTTTCACTGTT
TGCCTTCAAACCGTTGTATCAGGTCGAGTTGGAGATGCGACGGAACAGCTGATTGCGATG
ATAAAAGTGATGAAGTCAACTGCGACGTTTGTGAAAGCGGCCAATACAGATGTCTCAGTG
GTGATTGTATCGCCATCAGCAAAGTTTGCAACAAGAAACCAGATTGCCCTGATGGATCGG
ATGAGAGGCCTGTCCACTCATGCAATGGTTCCATCATCTTGGGATCGAACTTCACATCAT
GTGAGGATAGGAACGGAGGTTGTGAACACAGATGCAAGGAGACGCCGCACGGATCGTTGT
GTACATGCAGGAAGGGATTTCAAATCGCTCCTGACATGAGAACTTGTATTGATATCGACG
AGTGCAGAGTAGAAGGTTCGTGCAGTCAGATCTGCAACAACACTATGGGGAGTTTCGTGT
GTTCGTGTGTGGATGGTTACATACTACGACCTAACGGACGAACCTGCAAAGCTAGCGGTC
CCAAACCGGCGCTCCTATTCACGAACCGGATCGACATTCAGAAAATGTTACCGGATCGTT
CCGAATACAAACCGATTCTTCGAGACCTGGAAAACGCAATCGGCTTAGATTATCACATCG
AATTGGGTCTGATGTTCTGGACTGACGTGTCACTGGATCGCATTATGAGGTCATACATGA
ACGGAAGCGGTCAAGAACAAGTCGTTTCATCGGGACTTGAAAGCCCAGCCGGGGTCGCTG
TGGATTGGGTTCACAATCTTCTTTACTGGACGGATTCCGGAACATCCCGCATAGAAGTGT
CACGCTTGAACGGTTCCTACAGGAAAGTTCTGGTGTGGGATAATTTGCAAAAACCTCGAG
CTATCGCGCTCCACCCACTGGAGAGCTTGATGGTTTGGACGGACTGGGGGGAAACTCCCT
GTCTTGAGAGCGCTGCAATGGATGGAAGTATGAGAAAATCTTTGGCGTCGAGAAACCTTC
ACTGGCCGAACGGACTCACAATCGATTACACTCGAAATCACATCTACTGGGCAGACGCAA
AATATCACATCATCGAAAAGATTAACTTAGACGGAGGCGACAGAAGAACCGTCATCAGCA
GCGGCCTTCCGCATCCATTCGGGGTTACGATATTCGAGGACAGACTATATTGGACCGACT
GGCATACACGGAGTGTTAACAGTGTCAACAAATTTACTGGCAGCGGAGTTCAGACAATAA
GTAGCAGGCTGCACTTTCCCATGGACATTCAGACCTACCACCCTCTCAGACAACCAAAAG
GACCGAACCGTTGTAAGCATTCGAACTGCAGTCATTTGTGCTTGCCACATCCTGGAGGCA
TCTCATGCGCTTGTCCAACCGGATTCAGGCGTGTGAGCGACATCCAGTGTGCAGAAAACA
TCGAAAGATTTTTGGTGTTTACAAGAAGAACCGATATAAGACGAATTTCGTTTGACGGAG
CTGGGCGAGCTGACAGTGTTATACCTCT
| PANTHER |
LRP4 (IPR030799) - T[2-688] 1.1E-269 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[9-45] 8.64E-7 - T[60-107] 7.2E-6 - T[109-145] 4.32E-10 - T[150-186] 1.31E-10 - T[191-227] 9.82E-10 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[11-48] 1.9E-8 - T[62-109] 1.2E-5 - T[110-147] 1.6E-13 - T[150-187] 2.8E-13 - T[191-228] 1.6E-9 - T[229-269] 1.7E-10 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[11-47] 13.15 - T[62-108] 12.788 - T[110-146] 13.325 - T[150-186] 14.088 - T[191-228] 13.275 - T[229-268] 11.988 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[12-45] 2.0E-7 - T[62-107] 2.2E-5 - T[110-145] 4.4E-10 - T[150-185] 4.1E-12 - T[191-227] 3.0E-11 - T[230-265] 1.3E-9 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[17-45] 1.26383E-6 - T[63-107] 7.81738E-5 - T[111-145] 1.28312E-10 - T[151-185] 1.68721E-10 - T[192-227] 1.59686E-8 - T[230-262] 9.77954E-8 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[23-44] 4.3E-39 - T[83-104] 4.3E-39 - T[121-142] 4.3E-39 - T[161-182] 4.3E-39 - T[203-224] 4.3E-39 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[25-46] . - T[163-185] . - T[242-267] . |
| SMART |
EGF-like_dom (IPR000742) - T[110-146] 150.0 - T[279-316] 3.0 - T[320-356] 0.003 - T[623-657] 1.0 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[229-357] 9.1E-12 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[317-356] 3.7E-9 - T[624-657] 0.8 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[317-355] 4.0E-7 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[317-340] . |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[331-342] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[340-355] . |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[360-663] 2.7E-128 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[382-424] 9.7E-6 - T[425-467] 2.2E-15 - T[468-511] 7.3E-8 - T[512-554] 1.6E-12 - T[555-596] 6.4E-10 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[402-444] 15.099 - T[445-487] 15.748 - T[488-531] 12.778 - T[532-574] 15.261 - T[575-615] 4.958 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[402-442] 4.9E-9 - T[445-485] 2.1E-12 - T[492-529] 5.8E-10 - T[532-571] 1.2E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP4_HUMAN | 52.217 % | 705 | 0 |
| VLDLR_HUMAN | 39.381 % | 479 | 1.35E-158 |
| LDLR_HUMAN | 37.62 % | 465 | 2.28E-153 |