- Transcript 'KH2012:KH.C1.340.v2....' >
- Transcript 'Phmamm.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S691.g11254.02.t
Possible name(s)
LRP4; LRP6
Gene model
Location
S691 [49,761 / 64,773]
Amino acid sequence
Length: 1,382
>Phmamm.CG.MTP2014.S691.g11254.02.p
MVWTDWGETPCLESAAMDGSMRKSLASRNLHWPNGLTIDYTRNHIYWADAKYHIIEKINL
DGGDRRTVISSGLPHPFGVTIFEDRLYWTDWHTRSVNSVNKFTGSGVQTISSRLHFPMDI
QTYHPLRQPKGPNRCKHSNCSHLCLPHPGGISCACPTGFRRVSDIQCAENIERFLVFTRR
TDIRRISFDGAGRADSVIPLEGLRGAIALDWHSLHPGYIYWSDVDSDTISRAEWDGRNAR
VIVSSGVSSPVGLAIDWITNKIYWTDAGVNRIEVALLDGSMRSVLVWTGLDRPRGIVVYP
KAGLMIWSDWGHAAPKIERAGMDGSQRTTIVSSGLTWPNGVAIDYTTERVYWTEAGRSYQ
AIEACDLDGGNRRKIIEHNLPHPFGITLDETRIYWTDWDSKSINSADKETGENRQVLREH
LEQLMDIRYFHQTRPQSPNPCSLRNGGCSHLCLLAPRGNAPLTIEETPYSCACPTGLSLG
PSGKECNTKMNKFLAIARRTDIRVISLDVAYSADMKLPIDAYMTNVADVDVDPQEGYIYW
SDNGSREITRSSLADQSKSEVVIDSGLDMVDGIAIDHVGRFIYWTDDGRDVISVSSLDGK
MRRILIDDNMGSPRAIALHYELGYMYWTDWGNSPGAKIERAGLDGTNRSVIVSNDLIWPN
AVVIDQERGLVIWGDAQTERIECSDLEGGNRTILYAQASHPYSLAILDGIIYWNDWGTRN
INQMSLSNISSVSVVRENMPHMMGMAAVSMDEKGNNRCGSNNGGCSHFCLRSPTSDTGFR
CACPTGVRMQEDGRTCTDLPSQYLLLATRLSIRRVSLEADFNMYEELPVGELENTIAVDY
HYGKQLLFFTDVYLDVIKRSHLNGSNVQTIISHGLKTMDGIAVDWVADNLFWTDAVLNTI
SVSRLDGSSRRVIISDNLDEPRALCVHPSRGLLFWTDWGGKARIEKAYMDGSGRKIVVRK
NLKWPNGLTIDYKQSRIYWVDAHDDLRRIETCDFNGRKRRIVVPSVPHGFSVTYLDNTLY
WTDWETKSLHSTKYPFNTSKRNTIIRGLEGLMDIKAVSASRQKGTSPCDVTTGYGACTHL
CLMKGSVEYTCACPSPTNPEDEEDGSILDGLGKGDFPVDHPESLQRNCSEIPIPPKPENS
STTRNVIAVTSAEVTTSPKVTTSPDVMGSGGTVSPQNHGLLRLLLASLGAAVVVFLVFAG
CGFLFWKRMKKRAVKQHDDGVRFQYLLDGQSSQSILNGSCTPRSDVSHTPSDVSDRYDDT
TTQYSRVSTLDAQRKPQQASPRRQGVTSPPNNLQGATPSDSPLLGETSDEKGDNVTADYV
TPDARARNKVKHRLVRHLQEKQPKSSVSTICTMLSEDDRKVPGSNPVEGESDSLLDHTTS
KC
Nucleotide sequence
Length: 4,149
>Phmamm.CG.MTP2014.S691.g11254.02.t
ATGGTTTGGACGGACTGGGGGGAAACTCCCTGTCTTGAGAGCGCTGCAATGGATGGAAGT
ATGAGAAAATCTTTGGCGTCGAGAAACCTTCACTGGCCGAACGGACTCACAATCGATTAC
ACTCGAAATCACATCTACTGGGCAGACGCAAAATATCACATCATCGAAAAGATTAACTTA
GACGGAGGCGACAGAAGAACCGTCATCAGCAGCGGCCTTCCGCATCCATTCGGGGTTACG
ATATTCGAGGACAGACTATATTGGACCGACTGGCATACACGGAGTGTTAACAGTGTCAAC
AAATTTACTGGCAGCGGAGTTCAGACAATAAGTAGCAGGCTGCACTTTCCCATGGACATT
CAGACCTACCACCCTCTCAGACAACCAAAAGGACCGAACCGTTGTAAGCATTCGAACTGC
AGTCATTTGTGCTTGCCACATCCTGGAGGCATCTCATGCGCTTGTCCAACCGGATTCAGG
CGTGTGAGCGACATCCAGTGTGCAGAAAACATCGAAAGATTTTTGGTGTTTACAAGAAGA
ACCGATATAAGACGAATTTCGTTTGACGGAGCTGGGCGAGCTGACAGTGTTATACCTCTG
GAAGGATTACGTGGAGCAATCGCATTGGACTGGCACAGTTTACATCCGGGATACATTTAC
TGGTCGGACGTTGATTCTGACACAATAAGCCGAGCGGAGTGGGATGGGAGAAATGCGAGG
GTGATCGTCAGCAGTGGCGTGTCTTCGCCAGTCGGTCTCGCTATAGATTGGATCACCAAC
AAAATATATTGGACCGATGCTGGGGTGAACAGGATTGAAGTTGCTCTGTTGGATGGATCG
ATGAGATCAGTGCTGGTCTGGACCGGGTTGGACAGACCAAGAGGAATTGTGGTTTATCCA
AAAGCTGGCTTGATGATTTGGTCAGACTGGGGTCACGCAGCACCCAAGATTGAGCGAGCT
GGGATGGACGGAAGTCAAAGAACTACTATTGTCTCTAGCGGCCTCACGTGGCCGAACGGC
GTTGCTATTGACTACACAACAGAGAGAGTATATTGGACGGAGGCGGGTCGTTCGTATCAA
GCCATCGAGGCTTGTGACTTGGATGGAGGAAATAGGAGGAAGATTATTGAGCACAACCTT
CCACATCCGTTCGGGATCACATTGGATGAAACTCGGATCTATTGGACGGATTGGGATTCG
AAGTCGATTAATAGCGCGGATAAGGAGACAGGAGAAAACCGTCAAGTTTTACGGGAACAC
TTGGAGCAACTGATGGACATCCGATATTTCCACCAAACCCGACCACAATCTCCTAACCCA
TGTTCTCTGCGAAACGGGGGTTGCTCTCATCTATGTCTTCTCGCCCCAAGGGGTAACGCA
CCCCTAACTATCGAGGAAACCCCCTATTCTTGCGCCTGCCCCACGGGGCTGTCCCTGGGA
CCCAGTGGAAAAGAATGCAACACCAAAATGAATAAGTTTCTGGCGATCGCACGCAGAACT
GACATCCGGGTTATTTCACTGGATGTTGCTTACTCGGCAGATATGAAGTTGCCGATCGAT
GCTTACATGACAAATGTTGCTGATGTCGACGTTGATCCACAGGAGGGTTACATTTACTGG
TCTGATAACGGTTCGCGGGAAATTACTCGAAGCTCATTGGCTGATCAATCCAAGAGCGAG
GTTGTGATTGATTCAGGACTCGACATGGTAGACGGAATAGCGATTGATCACGTGGGAAGA
TTTATCTACTGGACAGATGACGGTCGTGACGTCATATCTGTGTCGTCATTGGACGGGAAA
ATGCGTCGGATTTTGATCGACGATAATATGGGGTCGCCCCGAGCAATCGCTTTGCATTAT
GAGCTTGGCTACATGTATTGGACAGATTGGGGGAATTCACCTGGTGCGAAAATTGAACGA
GCCGGTTTGGATGGAACGAATCGTTCTGTGATTGTATCTAATGACCTCATTTGGCCCAAC
GCTGTCGTCATCGATCAAGAACGAGGTCTCGTCATCTGGGGTGACGCACAAACTGAGCGA
ATCGAATGTTCGGATTTGGAAGGAGGCAACCGAACGATTCTCTACGCACAAGCTTCCCAC
CCTTACTCACTTGCTATACTTGATGGCATCATCTACTGGAATGATTGGGGAACGCGGAAT
ATTAACCAGATGTCGTTAAGTAACATCAGCAGTGTTAGTGTTGTGCGTGAAAATATGCCA
CATATGATGGGGATGGCGGCTGTCTCCATGGATGAAAAAGGAAATAACAGGTGCGGTTCA
AACAACGGCGGATGCAGCCACTTCTGTCTGCGAAGCCCTACCTCAGACACCGGATTTAGG
TGCGCGTGTCCCACCGGAGTTCGGATGCAGGAAGACGGCAGAACTTGCACCGACTTGCCG
AGCCAATATCTGCTGCTCGCCACTCGCCTTTCCATCCGCCGGGTGTCGCTAGAGGCCGAC
TTTAACATGTACGAAGAACTTCCAGTAGGGGAGCTAGAGAACACCATAGCTGTGGATTAT
CACTATGGGAAACAGCTTCTTTTCTTCACTGACGTATATCTTGACGTCATCAAGCGTTCA
CACTTGAACGGTTCCAACGTACAGACGATAATTTCACACGGATTGAAGACGATGGACGGC
ATTGCTGTGGATTGGGTGGCCGACAATCTTTTCTGGACCGACGCAGTTCTTAATACGATC
TCTGTGTCGCGTTTGGACGGCAGTAGCAGACGCGTCATCATCAGTGATAATTTGGACGAA
CCACGTGCTTTGTGCGTTCACCCGTCACGTGGTCTGTTGTTCTGGACCGACTGGGGAGGA
AAAGCGAGAATTGAAAAAGCTTACATGGATGGGTCGGGAAGAAAGATTGTTGTTCGTAAA
AACCTGAAATGGCCGAACGGTTTGACGATAGATTACAAGCAATCTCGTATATACTGGGTG
GACGCACACGATGACCTGAGACGAATTGAAACTTGCGATTTCAACGGAAGGAAGAGAAGA
ATTGTGGTTCCATCTGTACCGCATGGATTCTCTGTTACTTATTTGGACAACACTTTATAC
TGGACTGATTGGGAAACAAAAAGTTTACATTCAACCAAATATCCGTTCAACACAAGCAAA
AGAAATACCATCATCCGTGGGTTGGAAGGTCTCATGGATATTAAGGCGGTTTCGGCTTCG
CGTCAGAAAGGAACAAGTCCTTGTGATGTCACAACAGGCTACGGCGCGTGCACTCATCTT
TGTTTGATGAAGGGGTCAGTCGAATACACGTGCGCGTGCCCGAGCCCCACTAACCCCGAA
GATGAGGAAGATGGGTCGATCCTGGACGGCCTGGGTAAAGGGGACTTCCCCGTGGATCAC
CCCGAATCCCTGCAACGCAACTGCAGCGAAATCCCGATTCCACCCAAACCCGAAAATTCT
TCAACCACTCGCAACGTCATTGCTGTGACGTCAGCGGAAGTAACTACGTCACCGAAAGTA
ACTACATCACCGGACGTGATGGGGTCAGGGGGCACGGTTTCCCCGCAAAACCACGGATTG
CTCAGATTGCTGCTCGCGTCGCTAGGTGCCGCTGTTGTGGTGTTCCTCGTGTTTGCCGGA
TGTGGATTCTTGTTTTGGAAGCGAATGAAAAAGCGGGCGGTGAAACAACACGACGATGGA
GTAAGATTCCAATATCTGTTGGACGGCCAGAGCAGCCAGAGTATTCTCAACGGGTCGTGC
ACCCCCCGCTCTGACGTTTCACACACGCCCTCTGACGTCAGCGATCGTTATGACGACACA
ACTACGCAATACAGTCGCGTTTCGACTTTGGACGCACAACGCAAACCTCAACAGGCTTCT
CCACGTCGCCAGGGGGTCACTTCACCCCCCAATAACTTACAGGGGGCGACACCTAGCGAC
TCGCCCCTGCTCGGTGAAACTTCCGACGAAAAGGGTGATAACGTCACTGCCGATTACGTC
ACCCCGGATGCGCGCGCACGCAACAAGGTGAAACACCGCTTGGTGCGCCACCTACAGGAA
AAACAGCCCAAGTCGAGTGTTTCCACGATATGCACGATGTTGTCCGAGGACGATCGAAAG
GTTCCGGGTTCGAATCCCGTCGAAGGCGAGTCGGATTCGCTACTGGATCACACAACAAGC
AAGTGTTGA
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[1-42] 12.987 - T[43-85] 15.261 - T[86-126] 4.958 - T[217-259] 16.862 - T[260-302] 15.563 - T[303-347] 14.751 - T[348-392] 14.704 - T[393-433] 6.629 - T[536-579] 12.361 - T[580-622] 14.867 - T[623-668] 15.493 - T[669-710] 9.53 - T[711-751] 6.652 - T[845-887] 12.361 - T[888-930] 15.54 - T[931-974] 15.934 - T[975-1003] 9.762 - T[1017-1063] 6.699 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[1-171] 5.8E-72 - T[172-434] 3.2E-97 - T[485-798] 1.0E-101 - T[799-1095] 8.7E-104 |
| PANTHER |
LRP4 (IPR030799) - T[2-1213] 0.0 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[3-40] 1.8E-9 - T[43-82] 2.7E-8 - T[217-257] 4.2E-6 - T[260-300] 2.1E-6 - T[305-345] 1.1E-8 - T[349-390] 2.5E-7 - T[580-620] 4.5E-10 - T[623-665] 3.2E-12 - T[846-885] 3.8E-6 - T[889-928] 1.1E-11 - T[931-972] 3.3E-11 |
| SMART |
LDLR_classB_rpt (IPR000033) - T[23-65] 1.6E-12 - T[66-107] 6.4E-10 - T[196-239] 2.3E-4 - T[240-282] 7.0E-16 - T[283-327] 1.7E-7 - T[328-372] 3.6E-14 - T[373-413] 3.0E-5 - T[516-558] 0.0057 - T[560-602] 2.7E-13 - T[603-648] 1.5E-14 - T[649-691] 1.1E-7 - T[692-731] 26.0 - T[825-867] 7.3E-6 - T[868-910] 3.7E-14 - T[911-954] 2.9E-12 - T[955-999] 1.2E-10 - T[1000-1041] 12.0 |
| SMART |
EGF-like_dom (IPR000742) - T[134-168] 1.0 - T[440-487] 2.1 - T[757-797] 1.2 - T[1067-1129] 110.0 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[136-487] 8.47E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP4_HUMAN | 51.849 % | 1236 | 0 |
| LRP6_HUMAN | 36.913 % | 759 | 0 |
| LRP5_HUMAN | 40.968 % | 701 | 0 |