- Transcript 'KH2012:KH.C3.697.v3....' >
- Transcript 'KH2012:KH.L24.10.v1....' >
- Transcript 'KH2012:KH.C4.686.v1....' >
- Transcript 'Harore.CG.MTP2014.S4...' >
- Transcript 'Phmamm.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S733.g11572.01.t
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
S733 [71,011 / 72,695]
Amino acid sequence
Length: 440
>Phmamm.CG.MTP2014.S733.g11572.01.p
KISLHQNMGEKDGNYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTCQWLPDV
TKPEGKDYTVHRLILGTHTSDEQNHMIIASVQLPTDDAQFDASHYDSERGEFGGFGSVSG
KIEIEIKINHEGEVNRARFMPQNPCIIGTKTPSSDVLVFDYTKHPSKPDPNGECCPDLRL
CGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDVGGKPREGRILDARNVYTGHTAVVEDV
SWHLLHESLFGSVADDQKLMIWDTRSNVCTKPSHTVDAHTAEVNCLSFNPYSEFILATGS
ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEE
QSAEDAEDGPPELLFVHGGHTAKISDFSWNPNEPWVACSVSEDNIMQVWQMAENIYNDEE
PEPGSSTTPAAELEQNASCT
Nucleotide sequence
Length: 1,485
>Phmamm.CG.MTP2014.S733.g11572.01.t
AAAAAATATCTTTGCATCAAAATATGGGTGAAAAAGATGGAAACTATGATGATGCAGTGG
AAGAAAGGGTCATCAATGAAGAATACAAAATATGGAAGAAAAACACACCATTTTTATATG
ATCTAGTGATGACTCATGCCTTGGAGTGGCCAAGTTTAACCTGTCAATGGCTTCCAGATG
TCACCAAGCCAGAAGGCAAAGATTACACAGTCCATCGTTTAATTCTGGGAACACACACCT
CTGATGAACAGAATCACATGATTATAGCAAGTGTGCAGTTACCAACTGATGATGCCCAGT
TTGATGCTTCTCATTATGACAGTGAGCGTGGAGAATTTGGTGGCTTTGGCTCTGTAAGTG
GAAAAATTGAAATCGAGATAAAAATAAATCATGAAGGAGAAGTTAATCGTGCAAGATTCA
TGCCTCAAAATCCTTGCATCATCGGCACCAAAACTCCATCTAGTGATGTTCTTGTATTTG
ATTATACCAAGCACCCAAGCAAACCTGACCCAAATGGTGAATGCTGTCCAGATCTAAGGC
TCTGCGGTCATCAAAAGGAAGGCTATGGCTTATCGTGGAATCCCAATCTTAGTGGCCATT
TATTGAGTGCCTCTGATGATCACACAATTTGCCTTTGGGATGTTGGCGGTAAACCAAGGG
AGGGCCGAATCTTAGATGCTCGAAATGTGTATACTGGCCACACAGCGGTTGTTGAAGATG
TCTCTTGGCATCTGTTACATGAGAGTCTGTTTGGCTCTGTAGCTGATGACCAAAAGTTAA
TGATTTGGGATACCAGATCTAACGTTTGCACCAAGCCCAGCCACACAGTTGATGCCCATA
CTGCTGAAGTCAATTGCTTGTCATTTAATCCATACAGTGAATTCATTTTGGCAACTGGGT
CAGCTGACAAAACCGTAGCCTTGTGGGATTTGAGAAACCTAAAGCTGAAATTGCATTCAT
TTGAGTCACACAAGGATGAGATTTTCCAGGTTCAATGGTCTCCACACAATGAAACAATTT
TAGCCTCAAGTGGAACTGATCGTCGCTTGAATGTTTGGGATCTGAGCAAAATCGGAGAAG
AACAGAGTGCAGAAGATGCTGAAGATGGTCCTCCCGAACTGCTCTTTGTCCATGGTGGTC
ACACAGCCAAGATATCTGACTTTTCCTGGAATCCAAATGAGCCATGGGTGGCTTGTTCAG
TTTCAGAAGACAACATCATGCAAGTGTGGCAAATGGCAGAGAACATTTATAATGATGAAG
AGCCAGAACCAGGAAGTTCCACTACTCCTGCTGCAGAGCTAGAGCAGAATGCCTCTTGTA
CATAAACAGAGCCTTCTTGTTGTCAAAGATTATGTGAGAATCTACAGTTGTGGTTCCATT
GGGTATTCAGTACCTTACAACTTGTATATACATTGATGTTGAAACAATGCCTTTCCCTAT
GTCATGTTTTTTGAAACGTTTTCCTGCATAACATAGTTTCAAACT
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[9-427] 4.0E-167 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[26-94] 2.5E-28 |
| SMART |
WD40_repeat (IPR001680) - T[119-160] 34.0 - T[171-213] 3.0E-5 - T[223-263] 0.18 - T[269-309] 8.2E-9 - T[313-353] 7.0E-7 - T[370-410] 0.0012 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[121-417] 5.86E-50 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[180-214] 11.277 - T[230-272] 9.105 - T[276-312] 13.85 - T[320-362] 12.948 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[180-419] 33.933 |
| Pfam |
WD40_repeat (IPR001680) - T[189-213] 0.1 - T[229-263] 0.15 - T[271-309] 2.3E-7 - T[317-353] 3.9E-4 - T[374-409] 0.001 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[200-214] 1.6E-8 - T[296-310] 1.6E-8 - T[340-354] 1.6E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[200-214] . - T[296-310] . - T[340-354] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 28.99 % | 121 | 3.2E-30 |
| RBBP7_HUMAN | 84.434 % | 759 | 0 |
| RBBP4_HUMAN | 90.12 % | 801 | 0 |