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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C5.392.v1....'
  2. Transcript 'Phmamm.CG.MTP2014.S7...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S733.g11572.02.t

Possible name(s)

GRWD1; RBBP4; RBBP7

Location

S733 [71,034 / 72,535]

Sequences

Amino acid sequence

Length: 433

>Phmamm.CG.MTP2014.S733.g11572.02.p
MGEKDGNYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTCQWLPDVTKPEGKD
YTVHRLILGTHTSDEQNHMIIASVQLPTDDAQFDASHYDSERGEFGGFGSVSGKIEIEIK
INHEGEVNRARFMPQNPCIIGTKTPSSDVLVFDYTKHPSKPDPNGECCPDLRLCGHQKEG
YGLSWNPNLSGHLLSASDDHTICLWDVGGKPREGRILDARNVYTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNVCTKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
DGPPELLFVHGGHTAKISDFSWNPNEPWVACSVSEDNIMQVWQMAENIYNDEEPEPGSST
TPAAELEQNASCT

Nucleotide sequence

Length: 1,302

>Phmamm.CG.MTP2014.S733.g11572.02.t
ATGGGTGAAAAAGATGGAAACTATGATGATGCAGTGGAAGAAAGGGTCATCAATGAAGAA
TACAAAATATGGAAGAAAAACACACCATTTTTATATGATCTAGTGATGACTCATGCCTTG
GAGTGGCCAAGTTTAACCTGTCAATGGCTTCCAGATGTCACCAAGCCAGAAGGCAAAGAT
TACACAGTCCATCGTTTAATTCTGGGAACACACACCTCTGATGAACAGAATCACATGATT
ATAGCAAGTGTGCAGTTACCAACTGATGATGCCCAGTTTGATGCTTCTCATTATGACAGT
GAGCGTGGAGAATTTGGTGGCTTTGGCTCTGTAAGTGGAAAAATTGAAATCGAGATAAAA
ATAAATCATGAAGGAGAAGTTAATCGTGCAAGATTCATGCCTCAAAATCCTTGCATCATC
GGCACCAAAACTCCATCTAGTGATGTTCTTGTATTTGATTATACCAAGCACCCAAGCAAA
CCTGACCCAAATGGTGAATGCTGTCCAGATCTAAGGCTCTGCGGTCATCAAAAGGAAGGC
TATGGCTTATCGTGGAATCCCAATCTTAGTGGCCATTTATTGAGTGCCTCTGATGATCAC
ACAATTTGCCTTTGGGATGTTGGCGGTAAACCAAGGGAGGGCCGAATCTTAGATGCTCGA
AATGTGTATACTGGCCACACAGCGGTTGTTGAAGATGTCTCTTGGCATCTGTTACATGAG
AGTCTGTTTGGCTCTGTAGCTGATGACCAAAAGTTAATGATTTGGGATACCAGATCTAAC
GTTTGCACCAAGCCCAGCCACACAGTTGATGCCCATACTGCTGAAGTCAATTGCTTGTCA
TTTAATCCATACAGTGAATTCATTTTGGCAACTGGGTCAGCTGACAAAACCGTAGCCTTG
TGGGATTTGAGAAACCTAAAGCTGAAATTGCATTCATTTGAGTCACACAAGGATGAGATT
TTCCAGGTTCAATGGTCTCCACACAATGAAACAATTTTAGCCTCAAGTGGAACTGATCGT
CGCTTGAATGTTTGGGATCTGAGCAAAATCGGAGAAGAACAGAGTGCAGAAGATGCTGAA
GATGGTCCTCCCGAACTGCTCTTTGTCCATGGTGGTCACACAGCCAAGATATCTGACTTT
TCCTGGAATCCAAATGAGCCATGGGTGGCTTGTTCAGTTTCAGAAGACAACATCATGCAA
GTGTGGCAAATGGCAGAGAACATTTATAATGATGAAGAGCCAGAACCAGGAAGTTCCACT
ACTCCTGCTGCAGAGCTAGAGCAGAATGCCTCTTGTACATAA

InterProScan

Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[2-420] 3.8E-167
Pfam
Histone-bd_RBBP4_N (IPR022052) - T[19-87] 2.4E-28
SMART
WD40_repeat (IPR001680) - T[112-153] 34.0 - T[164-206] 3.0E-5 - T[216-256] 0.18 - T[262-302] 8.2E-9 - T[306-346] 7.0E-7 - T[363-403] 0.0012
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[114-410] 5.5E-50
ProSiteProfiles
WD40_repeat (IPR001680) - T[173-207] 11.277 - T[223-265] 9.105 - T[269-305] 13.85 - T[313-355] 12.948
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[173-412] 33.933
Pfam
WD40_repeat (IPR001680) - T[182-206] 0.1 - T[222-256] 0.15 - T[264-302] 2.3E-7 - T[310-346] 3.8E-4 - T[367-402] 0.001
PRINTS
G-protein_beta_WD-40_rep (IPR020472) - T[193-207] 1.5E-8 - T[289-303] 1.5E-8 - T[333-347] 1.5E-8
ProSitePatterns
WD40_repeat_CS (IPR019775) - T[193-207] . - T[289-303] . - T[333-347] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
GRWD1_HUMAN 28.99 % 121 3.12E-30
RBBP7_HUMAN 84.434 % 759 0
RBBP4_HUMAN 90.12 % 801 0