- Transcript 'KH2012:KH.C5.392.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S733.g11572.02.t
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
S733 [71,034 / 72,535]
Amino acid sequence
Length: 433
>Phmamm.CG.MTP2014.S733.g11572.02.p
MGEKDGNYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTCQWLPDVTKPEGKD
YTVHRLILGTHTSDEQNHMIIASVQLPTDDAQFDASHYDSERGEFGGFGSVSGKIEIEIK
INHEGEVNRARFMPQNPCIIGTKTPSSDVLVFDYTKHPSKPDPNGECCPDLRLCGHQKEG
YGLSWNPNLSGHLLSASDDHTICLWDVGGKPREGRILDARNVYTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNVCTKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
DGPPELLFVHGGHTAKISDFSWNPNEPWVACSVSEDNIMQVWQMAENIYNDEEPEPGSST
TPAAELEQNASCT
Nucleotide sequence
Length: 1,302
>Phmamm.CG.MTP2014.S733.g11572.02.t
ATGGGTGAAAAAGATGGAAACTATGATGATGCAGTGGAAGAAAGGGTCATCAATGAAGAA
TACAAAATATGGAAGAAAAACACACCATTTTTATATGATCTAGTGATGACTCATGCCTTG
GAGTGGCCAAGTTTAACCTGTCAATGGCTTCCAGATGTCACCAAGCCAGAAGGCAAAGAT
TACACAGTCCATCGTTTAATTCTGGGAACACACACCTCTGATGAACAGAATCACATGATT
ATAGCAAGTGTGCAGTTACCAACTGATGATGCCCAGTTTGATGCTTCTCATTATGACAGT
GAGCGTGGAGAATTTGGTGGCTTTGGCTCTGTAAGTGGAAAAATTGAAATCGAGATAAAA
ATAAATCATGAAGGAGAAGTTAATCGTGCAAGATTCATGCCTCAAAATCCTTGCATCATC
GGCACCAAAACTCCATCTAGTGATGTTCTTGTATTTGATTATACCAAGCACCCAAGCAAA
CCTGACCCAAATGGTGAATGCTGTCCAGATCTAAGGCTCTGCGGTCATCAAAAGGAAGGC
TATGGCTTATCGTGGAATCCCAATCTTAGTGGCCATTTATTGAGTGCCTCTGATGATCAC
ACAATTTGCCTTTGGGATGTTGGCGGTAAACCAAGGGAGGGCCGAATCTTAGATGCTCGA
AATGTGTATACTGGCCACACAGCGGTTGTTGAAGATGTCTCTTGGCATCTGTTACATGAG
AGTCTGTTTGGCTCTGTAGCTGATGACCAAAAGTTAATGATTTGGGATACCAGATCTAAC
GTTTGCACCAAGCCCAGCCACACAGTTGATGCCCATACTGCTGAAGTCAATTGCTTGTCA
TTTAATCCATACAGTGAATTCATTTTGGCAACTGGGTCAGCTGACAAAACCGTAGCCTTG
TGGGATTTGAGAAACCTAAAGCTGAAATTGCATTCATTTGAGTCACACAAGGATGAGATT
TTCCAGGTTCAATGGTCTCCACACAATGAAACAATTTTAGCCTCAAGTGGAACTGATCGT
CGCTTGAATGTTTGGGATCTGAGCAAAATCGGAGAAGAACAGAGTGCAGAAGATGCTGAA
GATGGTCCTCCCGAACTGCTCTTTGTCCATGGTGGTCACACAGCCAAGATATCTGACTTT
TCCTGGAATCCAAATGAGCCATGGGTGGCTTGTTCAGTTTCAGAAGACAACATCATGCAA
GTGTGGCAAATGGCAGAGAACATTTATAATGATGAAGAGCCAGAACCAGGAAGTTCCACT
ACTCCTGCTGCAGAGCTAGAGCAGAATGCCTCTTGTACATAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[2-420] 3.8E-167 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[19-87] 2.4E-28 |
| SMART |
WD40_repeat (IPR001680) - T[112-153] 34.0 - T[164-206] 3.0E-5 - T[216-256] 0.18 - T[262-302] 8.2E-9 - T[306-346] 7.0E-7 - T[363-403] 0.0012 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[114-410] 5.5E-50 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[173-207] 11.277 - T[223-265] 9.105 - T[269-305] 13.85 - T[313-355] 12.948 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[173-412] 33.933 |
| Pfam |
WD40_repeat (IPR001680) - T[182-206] 0.1 - T[222-256] 0.15 - T[264-302] 2.3E-7 - T[310-346] 3.8E-4 - T[367-402] 0.001 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[193-207] 1.5E-8 - T[289-303] 1.5E-8 - T[333-347] 1.5E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[193-207] . - T[289-303] . - T[333-347] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 28.99 % | 121 | 3.12E-30 |
| RBBP7_HUMAN | 84.434 % | 759 | 0 |
| RBBP4_HUMAN | 90.12 % | 801 | 0 |