- Clone 'csga006n06' >
- Transcript 'Cisavi.CG.ENS81.R1.6...' >
- Transcript 'KH2012:KH.C13.151.v1...' >
- Transcript 'Phmamm.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S766.g11809.01.t
Possible name(s)
HNF4A; HNF4G; RXRA
Gene model
Location
S766 [40,647 / 50,588]
Amino acid sequence
Length: 484
>Phmamm.CG.MTP2014.S766.g11809.01.p
SPPSLSGGPTTVSNFAFGHSNPISPTNSMQGDAPMIPISPDPNGIPAHMINGHGSDHDSN
QSIHENDGVRAFCAICGDRATGKHYGANSCDGCKGFFRRSVRKNHQYQCRFNRNCTVDKD
KRNQCRYCRLRKRFRAGMKKEAVQNERDRISTKKSPIDDSTSLSVTTLLNADNMSKQTSA
GVGAEPVDITIDNKKIASVNDVCDSMRQQLLVLVEWAKYIPAFSELPLDDQVALLRAHAG
ENLLMGVAKRSLPYQDILLLGNDFIIPRHCPEVEINRVAVRVLDELVRPLNELALDDTEF
ACLKAIVFFHPDARGLSNSVKIKTMRSQVMCNLEDYINDRQYDSRGRFGEILLLLPTLQS
ITWQMIEQIQFVRLFGVAHVDNLLQEMLLGSDNQTNMVPTTLPISSPAMPTSPAHLHVSC
PNGPGVGQSGVMGLGAQHQDIKPCLVSPGGSPTLPQSAMLLRDVPIGMDVDGSIIGIQPK
SEIA
Nucleotide sequence
Length: 1,760
>Phmamm.CG.MTP2014.S766.g11809.01.t
CTCGCCTCCATCTTTATCTGGCGGCCCTACAACAGTTTCAAACTTCGCCTTTGGGCACTC
CAACCCGATCAGCCCCACCAACAGCATGCAAGGGGACGCCCCCATGATACCCATCTCACC
GGACCCCAACGGTATCCCGGCTCATATGATCAACGGTCACGGGAGCGATCACGATTCCAA
TCAATCGATTCACGAAAATGATGGCGTTCGTGCATTTTGTGCGATTTGTGGAGACAGGGC
TACAGGAAAACACTACGGCGCTAACAGCTGTGATGGTTGCAAAGGATTCTTCAGGAGAAG
CGTCCGTAAAAATCATCAATACCAATGCAGATTCAATCGCAATTGTACAGTAGACAAAGA
TAAACGGAACCAATGTCGCTACTGTCGTCTGCGAAAACGCTTTCGGGCGGGAATGAAAAA
AGAAGCCGTGCAGAACGAGCGGGATCGAATCAGTACAAAGAAATCTCCCATCGATGATTC
CACTTCACTTTCTGTCACTACTTTGTTAAATGCAGACAACATGTCTAAGCAGACATCGGC
AGGTGTGGGGGCAGAACCCGTTGACATCACAATCGACAACAAGAAAATTGCATCGGTCAA
TGACGTATGCGATTCGATGCGTCAGCAACTGCTTGTTCTGGTTGAGTGGGCAAAATATAT
CCCTGCATTTTCCGAGTTGCCTCTTGATGATCAGGTGGCGCTGTTGCGTGCACACGCGGG
AGAAAACCTTCTCATGGGGGTCGCCAAAAGGTCACTACCTTACCAGGACATACTGTTGTT
GGGGAACGACTTTATAATTCCAAGACACTGTCCCGAAGTTGAAATAAATCGTGTAGCTGT
CCGAGTACTCGACGAACTCGTTCGACCTCTTAATGAACTCGCACTTGACGACACAGAGTT
CGCCTGTCTCAAAGCAATTGTCTTCTTTCATCCGGATGCAAGAGGTCTCAGCAATTCAGT
GAAGATTAAAACTATGCGTTCACAAGTGATGTGCAATTTGGAAGATTACATCAACGACAG
ACAATACGACTCAAGGGGAAGGTTTGGTGAAATTCTTCTTCTGCTTCCGACTCTTCAAAG
CATCACGTGGCAGATGATTGAACAAATTCAGTTCGTACGTTTGTTTGGAGTCGCCCATGT
TGATAATCTGCTGCAGGAAATGTTGCTTGGAAGCGACAACCAAACCAACATGGTTCCTAC
AACACTCCCTATATCGAGCCCAGCTATGCCTACCAGCCCCGCTCATTTGCATGTAAGTTG
CCCCAACGGCCCCGGAGTGGGCCAAAGTGGGGTCATGGGTCTAGGGGCGCAACACCAGGA
CATCAAACCGTGTCTGGTGAGCCCCGGAGGTTCACCCACATTGCCCCAATCAGCCATGCT
CTTGAGAGATGTCCCAATTGGAATGGACGTTGATGGGTCGATTATTGGAATTCAGCCAAA
GTCTGAGATTGCTTGAACTATTATAACGCCTTTTTGTCTCGTTTACTGGGTTCTGGGTAG
ACCGGGGATTTTGGTTTCAGCGGTTGCATTCACTTTTTTTCGAACCGTTGTCAGTAGATT
TGTCCGTTTTTCATCTTTCGTACAAAGTGAAACCTATCCGCGCTGTTGCAGCCGATCCAA
AGGCCTTCTCAAATTGTCAGCGACTCGATTTTGATTTTGTCAGTAATCCTAATTTGTCAT
TTAATATCAAAAGAGAAATCTGAATCAACGCCATGAAATCAACGCCACATACGTCATCGC
TCTATACACGTGACGTCATC
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[61-153] 8.6E-32 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[70-145] 19.996 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[70-141] 1.2E-33 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[72-140] 5.6E-28 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[73-89] 5.7E-16 - T[89-104] 5.7E-16 - T[122-130] 5.7E-16 - T[130-138] 5.7E-16 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[73-99] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[134-144] 2.1E-26 - T[205-226] 2.1E-26 - T[226-242] 2.1E-26 - T[293-308] 2.1E-26 - T[350-367] 2.1E-26 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[139-388] 3.93E-63 |
| PRINTS |
Retinoid-X_rcpt/HNF4 (IPR000003) - T[141-154] 1.0E-6 - T[281-299] 1.0E-6 - T[322-341] 1.0E-6 |
| ProSiteProfiles |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[160-391] 55.544 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[195-375] 7.9E-39 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[204-362] 9.9E-48 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RXRA_HUMAN | 39.211 % | 266 | 4.45E-84 |
| HNF4A_HUMAN | 72.531 % | 494 | 5.01E-173 |
| HNF4G_HUMAN | 73.538 % | 492 | 4.05E-173 |