- Clone 'AJ494415' >
- Transcript 'Phmamm.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S766.g11809.02.t
Possible name(s)
HNF4A; HNF4G; RXRA
Gene model
Location
S766 [40,951 / 51,933]
Amino acid sequence
Length: 438
>Phmamm.CG.MTP2014.S766.g11809.02.p
MMNYRYHPQYYRHVQFGYWPDPHDSPPSLSGGPTTVSNFAFGHSNPISPTNSMQGDAPMI
PISPDPNGIPAHMINGHGSDHDSNQSIHENDGVRASVQNERDRISTKKSPIDDSTSLSVT
TLLNADNMSKQTSAGVGAEPVDITIDNKKIASVNDVCDSMRQQLLVLVEWAKYIPAFSEL
PLDDQVALLRAHAGENLLMGVAKRSLPYQDILLLGNDFIIPRHCPEVEINRVAVRVLDEL
VRPLNELALDDTEFACLKAIVFFHPDARGLSNSVKIKTMRSQVMCNLEDYINDRQYDSRG
RFGEILLLLPTLQSITWQMIEQIQFVRLFGVAHVDNLLQEMLLGSDNQTNMVPTTLPISS
PAMPTSPAHLHVSCPNGPGVGQSGVMGLGAQHQDIKPCLVSPGGSPTLPQSAMLLRDVPI
GMDVDGSIIGIQPKSEIA
Nucleotide sequence
Length: 1,317
>Phmamm.CG.MTP2014.S766.g11809.02.t
ATGATGAACTACAGATATCACCCACAGTATTATCGACATGTTCAGTTTGGTTATTGGCCT
GATCCTCATGACTCGCCTCCATCTTTATCTGGCGGCCCTACAACAGTTTCAAACTTCGCC
TTTGGGCACTCCAACCCGATCAGCCCCACCAACAGCATGCAAGGGGACGCCCCCATGATA
CCCATCTCACCGGACCCCAACGGTATCCCGGCTCATATGATCAACGGTCACGGGAGCGAT
CACGATTCCAATCAATCGATTCACGAAAATGATGGCGTTCGTGCATCCGTGCAGAACGAG
CGGGATCGAATCAGTACAAAGAAATCTCCCATCGATGATTCCACTTCACTTTCTGTCACT
ACTTTGTTAAATGCAGACAACATGTCTAAGCAGACATCGGCAGGTGTGGGGGCAGAACCC
GTTGACATCACAATCGACAACAAGAAAATTGCATCGGTCAATGACGTATGCGATTCGATG
CGTCAGCAACTGCTTGTTCTGGTTGAGTGGGCAAAATATATCCCTGCATTTTCCGAGTTG
CCTCTTGATGATCAGGTGGCGCTGTTGCGTGCACACGCGGGAGAAAACCTTCTCATGGGG
GTCGCCAAAAGGTCACTACCTTACCAGGACATACTGTTGTTGGGGAACGACTTTATAATT
CCAAGACACTGTCCCGAAGTTGAAATAAATCGTGTAGCTGTCCGAGTACTCGACGAACTC
GTTCGACCTCTTAATGAACTCGCACTTGACGACACAGAGTTCGCCTGTCTCAAAGCAATT
GTCTTCTTTCATCCGGATGCAAGAGGTCTCAGCAATTCAGTGAAGATTAAAACTATGCGT
TCACAAGTGATGTGCAATTTGGAAGATTACATCAACGACAGACAATACGACTCAAGGGGA
AGGTTTGGTGAAATTCTTCTTCTGCTTCCGACTCTTCAAAGCATCACGTGGCAGATGATT
GAACAAATTCAGTTCGTACGTTTGTTTGGAGTCGCCCATGTTGATAATCTGCTGCAGGAA
ATGTTGCTTGGAAGCGACAACCAAACCAACATGGTTCCTACAACACTCCCTATATCGAGC
CCAGCTATGCCTACCAGCCCCGCTCATTTGCATGTAAGTTGCCCCAACGGCCCCGGAGTG
GGCCAAAGTGGGGTCATGGGTCTAGGGGCGCAACACCAGGACATCAAACCGTGTCTGGTG
AGCCCCGGAGGTTCACCCACATTGCCCCAATCAGCCATGCTCTTGAGAGATGTCCCAATT
GGAATGGACGTTGATGGGTCGATTATTGGAATTCAGCCAAAGTCTGAGATTGCTTGA
| PRINTS |
Retinoid-X_rcpt/HNF4 (IPR000003) - T[95-108] 2.1E-5 - T[235-253] 2.1E-5 - T[276-295] 2.1E-5 |
| ProSiteProfiles |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[114-345] 55.544 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[118-343] 1.57E-62 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[149-329] 6.4E-39 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[158-316] 9.9E-48 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[159-180] 3.9E-22 - T[180-196] 3.9E-22 - T[247-262] 3.9E-22 - T[304-321] 3.9E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RXRG_HUMAN | 36.471 % | 160 | 1.57E-44 |
| HNF4A_HUMAN | 67.46 % | 347 | 4.75E-116 |
| HNF4G_HUMAN | 70.12 % | 350 | 4.37E-118 |