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TRANSCRIPT CARD

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  1. Clone 'cien86223' > 
  2. Transcript 'KH2012:KH.C1.1061.v1...' > 
  3. Transcript 'Phmamm.CG.MTP2014.S8...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S821.g12178.01.t

Possible name(s)

DDX6; EIF4A1; EIF4A3

Gene model

Phmamm.CG.MTP2014.S821.g12178

Location

S821 [60,673 / 64,562]

Sequences

Amino acid sequence

Length: 312

>Phmamm.CG.MTP2014.S821.g12178.01.p
MIGRCDLNKDHVQALVLVPTRELALQTSQIAIELSRHMGALNVMVTTGGTNLRDDIMRLE
QSVHVIVATPGRILDLINKGIAKVDHCNMIVLDEADKLLSQDFKQMMDSLVQSLPVSRQI
LLFSATFPVTVKDFMARHMKKPYEINLMDELTLKGVTQYYAYVEEKKKVHCLNTLFSKLQ
INQSIIFCNSTHRVELLAKKITELGYSCFYIHAKMKQEYRNRVFHDFRQGMCRNLVCSDL
FTRGIDIQAVNVVINFDFPKMPETYLHRIGRSDRFSLAQIEEELKTEIKPIPPVIDKSLY
VAEHSQEEEKRE

Nucleotide sequence

Length: 939

>Phmamm.CG.MTP2014.S821.g12178.01.t
ATGATTGGAAGATGTGATCTAAACAAGGACCATGTACAAGCCCTGGTACTGGTTCCAACT
CGTGAATTAGCATTGCAAACATCACAAATTGCAATTGAATTGAGTCGACATATGGGAGCA
CTTAATGTGATGGTCACCACTGGTGGAACAAACCTTCGAGATGACATAATGCGACTTGAG
CAAAGTGTACATGTTATTGTTGCTACCCCTGGAAGAATTTTGGATCTAATCAACAAAGGA
ATTGCTAAAGTTGATCATTGCAATATGATTGTACTTGATGAGGCAGACAAGCTTCTTTCC
CAGGACTTCAAACAGATGATGGACAGTCTTGTTCAGTCTTTGCCTGTTAGCAGACAAATT
CTTCTTTTCTCTGCCACCTTTCCAGTAACAGTGAAGGATTTCATGGCCAGACACATGAAA
AAGCCATATGAAATCAATCTGATGGATGAACTAACTCTGAAAGGCGTAACTCAGTATTAT
GCCTATGTTGAGGAAAAAAAGAAAGTTCATTGCCTCAACACATTGTTTTCCAAGTTGCAA
ATCAACCAATCAATCATCTTCTGTAACTCAACTCACAGAGTTGAACTGCTTGCAAAGAAA
ATTACAGAGCTTGGATATTCCTGTTTTTACATCCACGCTAAAATGAAGCAGGAATATCGC
AACAGAGTGTTCCATGATTTTCGACAAGGTATGTGCCGCAACCTTGTATGCAGTGACCTG
TTTACTCGAGGAATTGACATTCAAGCTGTAAATGTTGTCATTAATTTTGACTTCCCTAAG
ATGCCCGAAACATACCTCCATCGCATTGGACGATCAGATCGTTTCAGTCTGGCTCAAATT
GAAGAAGAGTTGAAGACTGAAATCAAACCTATTCCTCCAGTAATTGATAAATCTCTGTAT
GTTGCTGAACACTCGCAAGAAGAAGAGAAACGAGAATGA

InterProScan

SMART
Helicase_ATP-bd (IPR014001) - T[1-159] 9.6E-18
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[1-145] 24.027
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[8-133] 6.4E-28
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[11-275] 5.28E-63
ProSitePatterns
RNA-helicase_DEAD-box_CS (IPR000629) - T[91-99] .
ProSiteProfiles
Helicase_C (IPR001650) - T[155-312] 19.771
CDD
Helicase_C (IPR001650) - T[156-275] 5.01591E-34
Pfam
Helicase_C (IPR001650) - T[168-275] 5.8E-26
SMART
Helicase_C (IPR001650) - T[195-276] 1.9E-25

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
IF4A3_HUMAN 36.996 % 203 1.42E-62
IF4A1_HUMAN 36.013 % 192 3.24E-58
DDX6_HUMAN 72.755 % 500 6.91E-178