- Transcript 'KH2012:KH.L151.2.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S841.g12309.01.t
Possible name(s)
BRIP1; RTEL1; RTEL1-TNFRSF6B
Gene model
Location
S841 [39,551 / 46,712]
Amino acid sequence
Length: 740
>Phmamm.CG.MTP2014.S841.g12309.01.p
MPVLDILGVNVEFPFTPYDVQTNYMTKIIEALQTGQNAVLESPTGTGKTLCLLCATLAWR
FSELKKIKALELQDKQIEEGLGAWGANNAAPNETTPNVAKIIYASRTHSQLSQVVKELKR
TAYGKQVVISLLGSREQMCIHPEVSKQTSNQTMVHMCRNKVNKHLCHFYNNVDDARKNGI
FTKEVMDIEELVQLGNKRNACPYYSTREVSKQVECGVIFTPYNYLLDRKSRRSHNLEIGG
NVIIFDEAHNLEKLCEESASFDLSSLDIANCIEEVGDLLNAVTKMAETGTVADGHEAGET
TALSEFKKDDVALMKSFFLALEEHLDKIELPASKSKSEPGRYIFDFFSKVNLTFDTHEIL
LELMDKISSYLSTLSNSFRTRGTALQKFSEIIKVAFSASSTGPGDAGTPTFSIYSAPARP
SIEELTRFYRVHICEDAPKTGKKDLWKKDKGTLKSKPMAEVAKASPGGLLVFFPSYAAME
HYVKAWRESSDVMRKLESTKLCTVEPRGKGELKDAIEKFYSDVKSPQGGALFAICRGKVS
EGLDFANDNGRAVLIVGIPFPPTQDAKVKLKMSFLDDLKRSGVPKVIPGSEWYRLQACRA
VNQAIGRVIRHRYDYGAIILCDQRFTRKDQVNELPQWIQSHVTSFDDCPKAMRRLRSFFC
SVREKENFRLRSLSGKDAVQPKRSQPAIDKRADKSTISSSASRQVSFGGMKKMYDITKLP
KMSDPDCHVPSRVNKPKYET
Nucleotide sequence
Length: 2,223
>Phmamm.CG.MTP2014.S841.g12309.01.t
ATGCCTGTGTTGGATATCCTAGGTGTAAACGTGGAATTTCCCTTTACTCCGTACGATGTC
CAAACAAATTACATGACAAAGATAATTGAGGCCCTGCAGACTGGACAAAACGCTGTACTG
GAATCACCAACGGGAACTGGCAAAACTCTTTGTCTGTTGTGCGCTACCTTGGCATGGAGA
TTTTCAGAACTTAAAAAAATAAAAGCCCTTGAACTCCAAGATAAGCAGATAGAGGAAGGT
TTAGGTGCTTGGGGTGCAAACAATGCAGCACCCAACGAAACTACCCCAAATGTTGCAAAA
ATCATCTATGCATCTCGTACACATTCCCAACTGTCCCAAGTGGTTAAAGAGTTGAAGCGA
ACAGCATACGGAAAACAAGTTGTTATCAGTTTACTCGGTTCTCGAGAGCAAATGTGTATT
CATCCAGAGGTATCGAAACAAACCAGCAATCAAACCATGGTCCACATGTGCAGAAACAAG
GTTAACAAGCACTTGTGTCATTTCTACAACAATGTTGATGATGCAAGGAAAAATGGAATC
TTCACCAAAGAAGTAATGGATATAGAAGAGCTTGTACAACTTGGAAACAAAAGAAATGCC
TGTCCCTACTATTCTACCAGGGAAGTTTCAAAACAAGTTGAGTGTGGTGTGATTTTTACA
CCATATAATTACCTGCTTGATCGAAAGTCCAGAAGGTCACATAATCTGGAAATTGGAGGA
AATGTGATTATATTTGATGAAGCTCATAACTTGGAGAAACTATGTGAAGAATCAGCATCA
TTCGATTTGTCCTCGTTGGACATAGCTAATTGCATTGAAGAAGTGGGAGATCTTTTAAAT
GCTGTTACAAAGATGGCTGAGACTGGAACTGTGGCAGATGGCCATGAAGCTGGTGAAACA
ACTGCATTGTCCGAATTTAAAAAGGATGATGTTGCTTTAATGAAGTCATTTTTTCTTGCA
TTGGAAGAACACCTTGATAAAATTGAACTCCCAGCATCAAAAAGCAAATCAGAACCAGGA
AGGTATATATTTGATTTCTTCAGCAAAGTCAACTTGACCTTTGATACACATGAAATTCTC
CTGGAACTTATGGACAAAATTTCATCCTACTTATCTACATTAAGCAACTCATTTCGGACG
CGTGGTACTGCTCTCCAGAAATTCTCTGAAATTATCAAGGTGGCTTTCAGTGCATCCTCG
ACTGGGCCAGGGGACGCCGGAACACCCACATTCTCAATTTATTCAGCACCTGCTCGGCCT
TCGATAGAGGAACTCACCCGATTCTACCGGGTTCACATATGCGAAGATGCACCTAAAACC
GGCAAGAAGGATTTGTGGAAGAAGGACAAAGGAACGTTAAAATCGAAACCAATGGCTGAA
GTGGCAAAGGCGTCACCTGGTGGCCTACTTGTCTTCTTTCCATCTTATGCTGCCATGGAA
CATTATGTAAAAGCGTGGAGGGAAAGCTCAGACGTTATGCGAAAGTTGGAATCAACCAAA
CTATGCACTGTTGAACCTCGCGGCAAGGGTGAACTAAAGGACGCCATCGAAAAATTCTAC
TCTGATGTCAAATCACCACAGGGTGGAGCCCTCTTCGCCATATGCAGGGGAAAGGTTTCT
GAGGGCCTCGACTTCGCCAATGACAACGGTCGTGCTGTACTTATCGTAGGGATTCCGTTT
CCTCCAACCCAAGATGCGAAAGTGAAGTTAAAGATGTCTTTTCTCGACGACCTGAAGCGC
TCCGGAGTACCAAAAGTTATTCCGGGTTCTGAATGGTATCGCTTGCAAGCTTGTAGAGCT
GTCAATCAGGCAATCGGACGCGTAATACGTCATCGATACGACTACGGGGCGATTATCCTT
TGCGATCAGCGCTTCACCAGAAAAGACCAAGTGAATGAGCTTCCCCAGTGGATTCAAAGT
CATGTTACGTCTTTCGACGACTGCCCCAAGGCAATGCGAAGACTCAGATCATTTTTCTGC
TCAGTCAGAGAAAAGGAAAATTTTCGTCTCCGGTCTTTATCGGGAAAGGATGCTGTACAA
CCGAAACGAAGTCAACCAGCTATCGATAAACGAGCTGACAAATCAACCATTAGTAGCAGC
GCTTCCCGTCAAGTGTCGTTTGGAGGGATGAAAAAAATGTACGACATCACAAAATTACCG
AAAATGAGCGACCCAGATTGCCATGTGCCTAGCAGAGTCAACAAACCAAAGTATGAAACA
TAA
| ProSiteProfiles |
Helic_SF1/SF2_ATP-bd_DinG/Rad3 (IPR014013) - T[7-302] 28.94 |
| SMART |
Helicase-like_DEXD_c2 (IPR006554) - T[9-288] 6.4E-66 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[10-253] 6.92E-13 - T[28-620] 1.03E-10 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[13-324] 0.0076 |
| Pfam |
DEAD_2 (IPR010614) - T[103-265] 7.1E-52 |
| Pfam |
ATP-dep_Helicase_C (IPR006555) - T[460-640] 1.7E-52 |
| SMART |
ATP-dep_Helicase_C (IPR006555) - T[476-627] 3.2E-54 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ERCC2_HUMAN | 34.409 % | 130 | 2.57E-31 |
| FANCJ_HUMAN | 38.462 % | 154 | 9.12E-39 |
| RTEL1_HUMAN | 42.825 % | 365 | 2.08E-111 |