Aniseed - Transcript Card

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S84.g02807.02.t

Possible name(s)

RDH13

Gene model

Phmamm.CG.MTP2014.S84.g02807

Location

S84 [210,581 / 212,312]

Sequences

Amino acid sequence

Length: 197

>Phmamm.CG.MTP2014.S84.g02807.02.p
VFNRVIVPISFTASLFGGVFLLREYTGGRKCPSNDRMDGKVVLITGANTGIGKETAKEIA
KRGAVVILGCRHMGKCAATAVEIRNVSQNKNVKCHFIDLANLDSVTEFVKEIKNEQQHID
VLVNNAGVMKPRSPKTTPNTDDGFERQFGVNHLGHFLLTNLLLDQLTNGESPGRVINVTS
DAYQKGKVDIDDIEKNE

Nucleotide sequence

Length: 594

>Phmamm.CG.MTP2014.S84.g02807.02.t
CGGTGTTTAATCGGGTGATTGTTCCAATATCATTCACTGCATCTTTATTTGGTGGAGTCT
TTCTTTTGAGAGAATACACTGGAGGAAGAAAATGCCCAAGCAATGATCGAATGGATGGAA
AAGTGGTTCTTATCACTGGAGCTAATACAGGAATTGGGAAGGAAACTGCAAAGGAAATTG
CAAAAAGGGGTGCTGTAGTTATATTAGGATGCCGCCATATGGGAAAATGTGCAGCAACAG
CAGTAGAAATTCGAAATGTTTCACAAAACAAAAATGTCAAATGTCACTTTATTGATCTTG
CCAACTTAGACTCAGTTACAGAATTTGTCAAAGAAATAAAAAATGAACAGCAACATATTG
ATGTGCTAGTTAACAATGCTGGAGTTATGAAACCAAGATCTCCAAAAACAACACCAAACA
CTGATGATGGTTTCGAAAGGCAATTTGGTGTTAACCACTTAGGGCATTTTCTTCTTACCA
ATCTTTTGTTGGATCAGTTAACAAATGGCGAATCTCCAGGAAGAGTAATCAATGTTACCT
CTGATGCCTATCAAAAGGGAAAGGTGGACATTGATGACATAGAAAAGAATGAAC

InterProScan

SUPERFAMILY	NAD(P)-bd_dom_sf (IPR036291) - T[35-186] 2.53E-40
Pfam	SDR_fam (IPR002347) - T[40-186] 5.9E-30
PRINTS	SDR_fam (IPR002347) - T[41-58] 9.0E-12 - T[117-128] 9.0E-12 - T[167-183] 9.0E-12

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RDH11_HUMAN	46.951 %	130	5.79E-37
RDH13_HUMAN	46.875 %	175	2.23E-54
RDH12_HUMAN	39.594 %	134	1.41E-38