Aniseed - Transcript Card

Transcript 'Phmamm.CG.MTP2014.S8...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S84.g02809.01.t

Possible name(s)

CD33; EXOSC4; EXOSC5

Gene model

Phmamm.CG.MTP2014.S84.g02809

Location

S84 [226,895 / 228,475]

Sequences

Amino acid sequence

Length: 180

>Phmamm.CG.MTP2014.S84.g02809.01.p
EMKCKQNVLKSTDGSVEFSQGDTVVLVGAYGPADCKESKQDVKEAIVEVNFRPKIGIPGI
AEKYLEQFVKGVCESCIQRSLHPRTTFSIIVQVIQDRGSLLSCAINGTSMALQDAGISMK
FMPVAVTVALKHKEEVSMETDCGTEDYDVIFSPSLEEEEKAFANLTLVFDSVKSELVSTY

Nucleotide sequence

Length: 543

>Phmamm.CG.MTP2014.S84.g02809.01.t
GTGAAATGAAATGCAAACAGAATGTTTTAAAGAGCACAGATGGTTCTGTTGAGTTCTCTC
AAGGGGATACAGTTGTGCTTGTTGGAGCTTATGGGCCAGCCGACTGCAAAGAATCAAAGC
AAGATGTAAAAGAAGCTATAGTGGAAGTCAATTTTCGGCCCAAAATTGGCATACCTGGTA
TAGCTGAAAAATACCTAGAACAATTTGTGAAAGGCGTATGTGAATCATGCATTCAGCGGT
CATTGCACCCCAGAACAACATTTTCCATTATAGTCCAAGTTATACAAGACCGTGGATCAC
TTCTCTCATGTGCAATAAATGGAACCAGCATGGCATTACAGGATGCTGGTATCTCTATGA
AGTTCATGCCGGTGGCTGTAACAGTGGCCCTAAAACACAAAGAAGAAGTTTCCATGGAAA
CTGATTGTGGCACAGAAGACTATGATGTCATTTTTAGTCCTTCACTGGAGGAAGAGGAAA
AAGCTTTTGCAAATTTAACTTTGGTTTTCGACAGCGTTAAATCGGAACTGGTTTCGACAT
ATG

InterProScan

Gene3D	PNPase/RNase_PH_dom_sf (IPR027408) - T[1-180] 2.2E-45
Pfam	ExoRNase_PH_dom1 (IPR001247) - T[2-117] 1.9E-20
SUPERFAMILY	Ribosomal_S5_D2-typ_fold (IPR020568) - T[2-117] 2.94E-27

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
EXOS5_HUMAN	41.954 %	149	1.59E-45