Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'KH2012:KH.C4.515.v1....' > 
  2. Clone 'AHC0AAA193YD09' > 
  3. Transcript 'Phmamm.CG.MTP2014.S8...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S892.g12633.02.t

Possible name(s)

ALYREF; PABPC1L; POLDIP3

Gene model

Phmamm.CG.MTP2014.S892.g12633

Location

S892 [38,075 / 42,781]

Sequences

Amino acid sequence

Length: 298

>Phmamm.CG.MTP2014.S892.g12633.02.p
MKKNTRKQGFRDARQKLNQRDARAKLNQISAQSKVVLTRHRKAFDARNKLNTLSKIKTEG
KKFDARIKIQGKTAKPKPALKEKKKKVTSDKLSLIKTLVINNSKDTGTSRTIRNPTAIAM
KRKEEKMPDFHKQKPTGFISVTNGCRVMLNKVTVEPAGMKVMVRNDAALAKVPAKQANKQ
NLQNSERKGLRITMTNPQALKETEVPGDISSPFEGTKIIVSNLHPVVVEEDILELFSVLG
PVRRARLIGSGKAEIVFIRRDDAIRAYQKYNNRDLDGQPMRMKLLLQERVPQPAMKYT

Nucleotide sequence

Length: 897

>Phmamm.CG.MTP2014.S892.g12633.02.t
ATGAAAAAGAACACAAGAAAGCAAGGTTTCAGGGATGCTCGACAGAAACTGAACCAGAGA
GATGCGAGAGCTAAACTCAATCAGATTTCAGCGCAGAGCAAAGTGGTGTTAACTCGTCAC
CGAAAAGCATTTGACGCAAGAAACAAACTTAACACTTTGTCAAAAATAAAGACCGAAGGC
AAGAAGTTTGATGCTCGGATCAAGATACAGGGGAAAACAGCGAAACCTAAACCAGCATTG
AAAGAAAAGAAGAAAAAGGTCACCTCGGATAAATTGTCGCTGATAAAAACACTTGTGATA
AATAATTCCAAAGACACTGGAACGTCTCGAACAATTCGAAACCCGACAGCTATTGCGATG
AAGAGAAAGGAAGAAAAGATGCCAGACTTTCACAAACAAAAACCTACTGGCTTTATATCA
GTCACAAATGGTTGCAGAGTGATGTTGAATAAGGTGACGGTGGAGCCAGCTGGCATGAAG
GTGATGGTGCGGAACGACGCAGCCCTCGCTAAAGTTCCCGCAAAACAAGCAAATAAACAA
AACTTGCAGAATTCCGAACGGAAAGGTTTGAGAATAACAATGACAAACCCACAAGCTTTG
AAGGAAACCGAAGTACCAGGTGACATATCCAGTCCGTTCGAGGGAACAAAAATCATCGTC
TCAAATTTGCATCCGGTTGTAGTGGAGGAAGATATATTGGAGCTTTTTAGCGTCCTCGGA
CCAGTGAGAAGGGCAAGATTAATCGGTTCCGGAAAAGCTGAGATCGTTTTTATTCGACGG
GATGATGCAATCAGGGCTTACCAAAAATACAACAATCGTGATTTAGATGGTCAGCCAATG
AGGATGAAGTTGTTACTTCAGGAAAGAGTTCCCCAACCAGCAATGAAATACACGTAA

InterProScan

PANTHER
PDIP3 (IPR034785) - T[5-291] 4.6E-51
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[163-291] 2.9E-12
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[206-291] 2.15E-15
CDD
PDIP3_RRM (IPR034784) - T[216-284] 2.41299E-35
ProSiteProfiles
RRM_dom (IPR000504) - T[216-287] 12.202
SMART
RRM_dom (IPR000504) - T[217-283] 3.4E-11
Pfam
RRM_dom (IPR000504) - T[218-280] 4.8E-9

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PDIP3_HUMAN 34.295 % 119 6.02E-31