- Clone 'cima051c01' >
- Clone 'cilv030l15' >
- Transcript 'Phmamm.CG.MTP2014.S9...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S90.g02950.01.t
Possible name(s)
COL6A1; COL6A2; COL6A5
Gene model
Location
S90 [162,140 / 176,090]
Amino acid sequence
Length: 1,092
>Phmamm.CG.MTP2014.S90.g02950.01.p
MKTRMLGKTNMFLADDPLLEVEPIPPDTMIGECSCKCCENAPADLEDPPPPCVNDVMVAV
DSSACFRDHHGRMMRFLKKLVRKIGRVDDIEYGASKTRLGLMQFSSDIENPIELRSFEDY
TNPASAKNLQAEILERFSSDIENPIELSSFEDYTNPASSKNLQAEILERVNGLRFLGEGS
FLNKALNTTVDNFRNQPRPDPILDDIAPTTPRKVLILMTNGKSHPDVTMEDIDASIAGLA
EAGIVVYPISVTRECHGVQTVAWNEGLCPATGILNSLAKVGREEGSSFLEMTSHETTTEL
INALQCPDSRTARKAEPPCNNCTCECEGEPGKKGEVGPDGPRGLKGEEGEKGDKGDQGEQ
GDIGPPGIDGIAGIEGEKGDEGEKGVQGQKGESGVDGNHGEDGDRGETGQKGEVGEKGIQ
GLKGDKGDEGDVGEQGIEGPQGVKGQKGESVKGDEGDDGNEGPVGPKGIKGDLGPEGDKG
RQGLCGQPGPAGLPGPDGIPGVDGAEGSRGPQGVQGPRGERGEIGERGENGVPGEQGFPG
RDGLRGERGPEGPQGERGFKGEKGEPSDVPGRPGIQGNRGGKGDSGADGSDGTDGAQGVP
GVQGPQGQTGPRGPPGELDLNQLRPIIAEIVRELLPAAPPQEPPNTCQEYPVDVVFLVDG
SDSIGREEFVSVKDWILLAVDRFKPGMRSIPLHVDVVQYSERSNIEVHQNVETNISEIEE
QVKAIEQMRSGTKTYTAIQFVNDEVVPEMRDGSFKILITMTDGDASDDRNEAAIEDARAN
FHMMFSVGVGDKVDNEELLDFSSNGHVFNVGDFAALESVIANIVENTCAGIDAILAEAGE
PVVTTVAPSLPPSRGDSSPGCIDAMTDLAFIIDGSSSVGMNGFSLLKEFLRNVVSGFHNV
GNDGTQVAMIQYTDNAHLEFDFSQTTSKQAVLNAIDNLVFRSGNTETGEAIEFAHALYND
IEGSRDSRKVAVVITDGRSQDDVKIPAEELRIAGAKIFAIGVGEAELVELEEIASSPLTD
FIFSVDDYTAIATIQEMLVEKICIAARGTYRSDDGETSSIKDEDLLPGGGKEPFPPDDDY
FNGGSGEFEFTI
Nucleotide sequence
Length: 3,279
>Phmamm.CG.MTP2014.S90.g02950.01.t
ATGAAAACCCGCATGCTCGGCAAAACCAACATGTTTCTTGCCGACGATCCTCTTTTGGAG
GTTGAACCAATTCCACCCGATACGATGATTGGAGAATGTTCATGCAAATGCTGCGAAAAT
GCACCCGCAGATTTGGAAGATCCACCACCTCCATGTGTGAATGACGTCATGGTAGCTGTG
GATAGCAGCGCGTGCTTCCGTGACCATCATGGCAGGATGATGCGATTTCTGAAAAAACTT
GTGCGGAAAATTGGCCGAGTCGACGACATTGAATACGGCGCAAGCAAAACACGCCTTGGC
CTAATGCAGTTTAGCAGCGATATTGAAAATCCCATTGAACTTCGCTCATTTGAAGATTAC
ACAAACCCGGCCAGTGCAAAGAATTTGCAAGCTGAAATCCTGGAAAGGTTTAGCAGCGAT
ATTGAAAATCCCATTGAACTTAGCTCATTTGAAGATTACACAAACCCGGCCAGTTCAAAG
AATTTGCAAGCTGAAATCCTGGAAAGGGTAAACGGCTTGCGTTTTCTCGGCGAAGGTTCC
TTTCTTAACAAAGCACTAAACACAACGGTGGATAATTTCCGTAATCAACCACGACCTGAC
CCGATCCTAGATGATATTGCACCAACCACACCACGCAAGGTACTGATTTTAATGACAAAC
GGCAAAAGTCATCCGGATGTGACAATGGAAGATATTGATGCATCGATTGCTGGTCTTGCC
GAGGCTGGGATAGTTGTCTATCCGATATCTGTAACAAGAGAATGCCACGGCGTTCAAACC
GTTGCGTGGAACGAAGGCCTCTGCCCGGCTACTGGTATACTTAACAGCTTGGCCAAAGTG
GGAAGAGAAGAAGGGTCGTCTTTCTTGGAAATGACTTCACACGAAACCACGACGGAACTC
ATCAACGCACTGCAGTGCCCAGACTCACGCACTGCTCGAAAAGCTGAACCGCCTTGCAAC
AACTGCACTTGTGAATGCGAAGGAGAACCAGGAAAGAAAGGCGAAGTTGGCCCTGATGGA
CCACGAGGTCTAAAAGGAGAAGAGGGAGAAAAGGGAGATAAAGGAGATCAAGGAGAACAG
GGAGACATTGGACCACCGGGTATTGATGGGATTGCAGGAATTGAGGGTGAAAAGGGTGAT
GAAGGAGAAAAGGGTGTACAGGGGCAAAAGGGTGAATCTGGAGTTGATGGAAATCACGGA
GAGGACGGTGATCGGGGCGAAACAGGACAAAAGGGAGAAGTGGGCGAAAAAGGAATACAA
GGTCTCAAGGGCGACAAGGGAGACGAAGGTGATGTTGGTGAACAGGGTATTGAGGGTCCC
CAGGGTGTCAAAGGACAGAAAGGAGAAAGCGTCAAGGGCGATGAAGGTGATGATGGCAAT
GAAGGCCCAGTTGGACCAAAAGGCATAAAAGGAGATCTAGGACCAGAGGGTGACAAGGGA
CGACAAGGACTTTGTGGTCAGCCGGGACCTGCTGGATTACCAGGCCCTGATGGAATTCCC
GGTGTCGATGGAGCCGAAGGTTCTCGGGGTCCGCAAGGTGTTCAAGGACCAAGAGGAGAA
CGTGGAGAAATCGGTGAAAGGGGCGAGAATGGAGTCCCTGGCGAGCAAGGTTTCCCTGGA
CGAGATGGTCTCCGTGGAGAGAGAGGTCCAGAAGGCCCACAGGGCGAGCGGGGATTCAAA
GGAGAGAAGGGTGAACCGTCAGACGTTCCAGGTAGACCTGGCATTCAGGGCAACCGTGGT
GGAAAGGGTGATTCAGGCGCCGATGGATCAGATGGAACTGATGGGGCACAGGGTGTTCCA
GGAGTACAAGGCCCACAGGGTCAAACAGGCCCCCGTGGACCCCCTGGCGAACTTGACCTC
AATCAACTCCGTCCAATCATTGCGGAGATTGTGCGTGAGCTGCTGCCAGCAGCACCGCCC
CAAGAACCCCCGAACACATGTCAAGAATATCCTGTTGATGTTGTTTTCCTCGTCGATGGA
AGTGACTCAATCGGTCGAGAAGAGTTTGTAAGTGTCAAGGACTGGATTCTTCTTGCCGTT
GATCGATTTAAGCCCGGAATGCGTTCAATTCCTTTGCACGTCGACGTAGTGCAATATTCA
GAACGTAGCAACATTGAAGTTCACCAAAACGTCGAAACTAACATTAGCGAAATCGAGGAG
CAAGTTAAAGCCATTGAGCAAATGCGTTCTGGCACTAAGACATACACCGCCATCCAGTTT
GTCAATGACGAAGTCGTACCCGAGATGCGCGATGGATCGTTCAAAATTCTTATCACTATG
ACTGATGGGGATGCTAGTGATGACCGCAACGAAGCTGCAATCGAAGATGCAAGAGCCAAT
TTCCACATGATGTTTTCAGTTGGTGTTGGCGACAAAGTCGACAACGAAGAGTTGTTAGAT
TTCAGCAGTAACGGCCACGTCTTCAATGTTGGTGATTTTGCAGCCTTGGAAAGCGTTATC
GCCAACATTGTTGAAAACACGTGTGCTGGTATCGACGCAATACTTGCAGAAGCTGGTGAA
CCTGTGGTGACAACCGTTGCCCCAAGTTTGCCCCCGAGTCGTGGTGATAGCAGCCCGGGA
TGCATCGACGCCATGACAGACCTGGCCTTCATCATTGACGGCAGTTCATCGGTGGGAATG
AACGGTTTTTCTCTTCTGAAAGAATTCCTGAGGAATGTTGTCAGCGGTTTCCACAACGTT
GGCAACGACGGAACACAAGTTGCGATGATCCAATACACGGACAATGCTCACTTGGAGTTC
GATTTCTCACAAACGACCAGCAAACAAGCTGTTCTTAATGCAATCGACAATCTGGTCTTC
AGAAGTGGAAACACTGAGACTGGTGAAGCAATTGAGTTTGCGCACGCCCTCTACAATGAC
ATAGAAGGCAGTCGGGATTCCAGAAAGGTTGCTGTCGTCATCACTGATGGAAGAAGTCAA
GATGACGTCAAAATCCCTGCAGAAGAACTGCGTATTGCAGGTGCAAAGATCTTTGCGATC
GGCGTCGGCGAAGCGGAACTTGTTGAACTTGAGGAAATTGCCTCGAGCCCCTTGACCGAT
TTCATCTTCAGTGTTGATGATTACACTGCCATAGCAACCATTCAGGAAATGCTGGTAGAG
AAGATCTGTATTGCCGCAAGGGGAACCTACAGATCAGACGATGGCGAGACAAGTTCGATC
AAAGATGAGGATCTCCTTCCAGGAGGCGGTAAAGAGCCCTTTCCACCAGATGACGATTAC
TTCAACGGAGGATCCGGAGAATTCGAATTCACCATCTAA
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[33-252] 4.6E-16 - T[637-829] 2.07E-37 - T[861-1043] 1.08E-49 |
| SMART |
VWF_A (IPR002035) - T[53-301] 0.0067 - T[651-828] 1.3E-22 - T[865-1043] 1.4E-45 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[55-304] 13.687 - T[653-823] 24.148 - T[867-1042] 30.54 |
| Pfam |
VWF_A (IPR002035) - T[160-251] 1.1E-5 - T[653-820] 6.7E-26 - T[867-1036] 4.6E-39 |
| Pfam |
Collagen (IPR008160) - T[328-384] 1.9E-9 - T[504-562] 2.0E-9 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[639-831] 6.3E-38 - T[865-1054] 4.1E-52 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6A5_HUMAN | 27.294 % | 201 | 3.16E-52 |
| CO6A2_HUMAN | 28.571 % | 199 | 2.35E-52 |
| CO6A1_HUMAN | 27.754 % | 218 | 2.53E-58 |