- Clone 'ciad077g22' >
- Clone 'cstb016k15' >
- Transcript 'Phmamm.CG.MTP2014.S9...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S91.g02970.01.t
Possible name(s)
NVL; SPATA5; VCP
Gene model
Location
S91 [126,984 / 143,361]
Amino acid sequence
Length: 853
>Phmamm.CG.MTP2014.S91.g02970.01.p
MPYQPSFDRRLPGRIKKYMENSPGVDSRSMADDLQKAFKNDYGRRKKTAFRLLVGQVHKD
ILNSGEFANVNKNDNFANKKKKRKISKQQNGSSASCSDDDVRLVEYKDTNLMNKSLSSIY
NKEEISNETPVPSKQPVSFDAAASENGWFIDRGPLKDQEISANKNLKFSNFEDKGLPIDV
NNNDNPNTVTTDTNTLVEMDDINIKLNETKAASLDLKDEKTASAKDINSPKVPIKRKKFK
RDPKLGKKKRKTDGKDAEEDFVPPFLQKQYEMKQSDLTFADFAGNEKSLKELARLLLHMN
HPEIYSTLGVSPPRGVLLHGPPGCGKTLLGNAIAGQLNILLLRLAGPELIGGVSGESERR
VREVFETATQNAPCVLFLDEIDAVAQRRENSSKEMERRIVAQLLTCMDEMNQGANQVMVV
GATNRPEMLDTALRRAGRFDREICLGIPDEQARTQILQVLCKGLKLADDVSYQLIARLTP
GYVGADLLSLCREAAMHAVNRILRVTGPDDVREPNSNKGDILELLRENQPFDDEKLNSLS
IECGDFQLAVRDVQPSAKREGFATIPDVTWDDVGALESIRDELSMAILGPVRNPRAFAAL
GLSRASGVLLAGPPGCGKTMLAKAVANESGINFVSVKGPELLNMYVGESERAVRQCFERA
RNSAPCVIFFDELDSLCPRRSSAEAGASARVVNQMLTELDGLESRKQVFVIAATNRPDII
DPAVLRPGRLDKTLYVGIPTKTDLVKILRTITKNGTQPQFTDDVDLESLARDDRCNGFTG
ADLSALVRESALNALRGTIGHTWSEIMPDEDDTTNNVKVSLQNVNDALDKLEPSISAKDR
AKYEAMRPRNQER
Nucleotide sequence
Length: 2,562
>Phmamm.CG.MTP2014.S91.g02970.01.t
ATGCCTTACCAGCCGAGTTTCGATCGCCGTCTTCCAGGCCGCATCAAAAAGTACATGGAA
AATAGTCCAGGAGTAGACAGCAGATCCATGGCTGATGATTTGCAAAAAGCATTCAAAAAT
GATTATGGAAGAAGAAAGAAAACTGCTTTTAGGCTTTTGGTTGGGCAAGTGCACAAGGAC
ATTCTTAATTCTGGTGAATTCGCAAATGTGAACAAAAATGACAATTTTGCGAACAAAAAG
AAGAAGAGAAAAATTTCGAAACAACAAAATGGTTCCAGTGCATCTTGTTCGGATGATGAT
GTCAGACTTGTGGAATACAAGGACACAAACTTGATGAACAAATCACTATCATCCATTTAC
AACAAAGAGGAAATATCAAATGAAACACCAGTGCCTTCCAAACAGCCTGTGTCTTTTGAT
GCAGCTGCTTCTGAAAATGGTTGGTTTATCGACAGAGGACCACTAAAAGACCAAGAAATT
TCAGCAAACAAAAACCTAAAATTTTCAAATTTTGAAGACAAAGGACTTCCAATTGATGTA
AATAATAATGACAACCCAAACACTGTCACAACAGACACTAATACATTAGTAGAAATGGAC
GACATCAACATTAAACTTAATGAAACAAAAGCAGCAAGTTTAGACCTAAAAGATGAAAAA
ACTGCTTCAGCAAAAGATATAAATTCACCTAAAGTTCCAATAAAGAGAAAAAAATTTAAA
AGAGATCCCAAACTTGGTAAAAAGAAAAGAAAAACTGATGGCAAAGATGCTGAAGAAGAT
TTTGTTCCTCCATTCCTGCAGAAACAGTACGAGATGAAACAGTCTGATCTAACATTTGCT
GATTTCGCTGGAAATGAAAAATCATTAAAAGAACTTGCCCGCTTGTTACTGCATATGAAT
CATCCAGAAATATACAGCACCCTTGGGGTTTCCCCACCTCGTGGGGTTTTGCTTCACGGA
CCCCCAGGGTGTGGGAAGACCCTTTTGGGAAATGCTATAGCTGGGCAGTTGAATATTCTT
CTCTTGCGATTGGCTGGTCCCGAGTTGATTGGAGGCGTGTCAGGGGAAAGTGAGAGGCGT
GTCCGAGAAGTGTTTGAAACTGCGACACAAAATGCACCTTGTGTTTTGTTCTTAGATGAA
ATTGATGCTGTGGCGCAACGACGAGAAAATTCATCAAAAGAGATGGAGCGTCGTATAGTG
GCCCAACTTTTAACGTGTATGGATGAAATGAACCAAGGTGCAAATCAGGTTATGGTCGTG
GGCGCCACCAACCGGCCAGAAATGCTCGACACGGCGTTAAGAAGGGCTGGCAGGTTCGAT
CGTGAAATATGTCTGGGAATTCCTGACGAACAAGCTCGCACACAAATCCTTCAAGTTCTC
TGCAAAGGTCTCAAGTTGGCTGATGACGTCAGCTACCAGCTTATTGCTCGATTAACTCCG
GGATATGTTGGAGCCGATTTATTATCTCTATGTCGCGAGGCCGCAATGCACGCAGTCAAC
CGTATCCTAAGAGTCACGGGTCCCGATGACGTCAGAGAACCGAATTCAAACAAGGGAGAT
ATTCTTGAACTTTTGCGGGAAAATCAACCGTTTGATGACGAGAAACTAAACTCTTTGTCA
ATCGAGTGCGGGGATTTCCAGCTAGCCGTTCGTGACGTACAACCTTCAGCCAAGCGTGAA
GGCTTCGCAACGATACCTGACGTCACGTGGGATGACGTCGGTGCTCTGGAATCGATTCGA
GATGAACTTTCCATGGCGATATTGGGGCCTGTTAGGAACCCACGGGCCTTTGCGGCTTTA
GGACTTTCCCGGGCATCTGGGGTGCTTCTTGCTGGACCCCCTGGGTGCGGTAAAACTATG
CTAGCGAAAGCTGTGGCCAACGAATCAGGGATAAACTTTGTGTCAGTGAAAGGGCCCGAA
CTCCTCAACATGTATGTCGGTGAAAGTGAACGAGCAGTGAGACAGTGCTTCGAACGAGCT
CGCAACTCTGCACCATGTGTGATATTTTTCGACGAACTCGACTCTCTGTGTCCCAGAAGA
TCTTCTGCAGAGGCCGGCGCCAGTGCTCGGGTCGTTAACCAGATGTTGACGGAGTTGGAT
GGCTTGGAATCCCGCAAACAAGTTTTTGTTATCGCGGCCACAAACCGACCTGACATCATT
GATCCGGCTGTGCTCAGGCCTGGACGATTGGACAAAACTTTGTACGTTGGAATTCCCACG
AAAACCGACCTGGTTAAAATTCTGCGAACAATTACCAAGAACGGGACTCAGCCTCAATTC
ACTGATGACGTAGATCTGGAGTCACTGGCGCGTGACGATCGGTGCAACGGGTTCACTGGG
GCAGATTTGTCAGCATTGGTTCGGGAATCCGCTTTAAACGCTTTGCGAGGAACAATAGGA
CATACTTGGAGCGAGATAATGCCAGATGAAGACGACACAACGAATAACGTTAAGGTTTCC
CTTCAAAATGTAAACGACGCTCTTGACAAACTAGAACCTTCCATTTCTGCCAAGGATCGC
GCAAAATACGAAGCAATGCGCCCACGAAACCAAGAGAGATGA
| Gene3D |
NLV2_N_sf (IPR038100) - T[3-69] 9.7E-14 |
| Pfam |
NVL2_nucleolin-bd (IPR031996) - T[8-64] 2.2E-14 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[276-515] 1.92E-58 - T[566-845] 3.17E-65 |
| SMART |
AAA+_ATPase (IPR003593) - T[312-449] 6.1E-19 - T[604-740] 4.2E-21 |
| Pfam |
ATPase_AAA_core (IPR003959) - T[316-445] 6.6E-42 - T[608-737] 1.2E-47 |
| ProSitePatterns |
ATPase_AAA_CS (IPR003960) - T[417-435] . - T[708-726] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SPAT5_HUMAN | 41.681 % | 423 | 8.73E-135 |
| TERA_HUMAN | 45.865 % | 483 | 6.72E-159 |
| NVL_HUMAN | 49.498 % | 796 | 0 |