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  1. Transcript 'Phmamm.CG.MTP2014.S9...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S965.g13023.01.t

Possible name(s)

NLRC3; NLRP8; NOD1

Location

S965 [31,261 / 36,008]

Sequences

Amino acid sequence

Length: 423

>Phmamm.CG.MTP2014.S965.g13023.01.p
MDKLELARNPIRDGGAKVLATCIHFIDRLGLRDCGITSRGTKALSSAISDRTKPMERLSL
EWNQVKDDGAKYLASCIHNIDELCLQNCFITDSGIIKLSSAIYKRPYPMRYFDVGENLFG
NEGGEHIATCLYNIEDRQNYEKSGNLPADVMKIIKPKLELLKHRDDYEFFETKSLIVGSE
GATLTVGGCIVDIPQNALSQPTTIKLTSCYGRRSKTLDHESISEESKKRLLYVSICDFPA
VHLLNSDYLRKEVHQGSFKISSERASFEILSPVGFDTDPTTLDIYEICTKPLFEFQIGIY
QNNREETDDKFKILIKSTDGKSTVYGKGDEGTFFMNPFAKKLQKADVAAVSITINKGKQE
QNVHMEGAIVDGGSIVGSQGNVDTTKRVLSTSQTPQCEDSEPSEYCGPAAKRRRMDSHEQ
HDE

Nucleotide sequence

Length: 1,272

>Phmamm.CG.MTP2014.S965.g13023.01.t
ATGGACAAATTGGAGCTGGCGCGCAATCCGATTAGAGATGGTGGAGCGAAAGTCTTAGCT
ACTTGCATACATTTTATTGACCGACTTGGACTTCGGGATTGTGGAATCACGAGCAGGGGC
ACCAAAGCCCTGTCATCAGCCATCAGCGATCGGACCAAGCCGATGGAAAGATTATCGCTC
GAGTGGAATCAAGTAAAAGATGACGGAGCAAAATATTTAGCATCTTGCATACACAACATT
GATGAACTTTGTCTCCAAAACTGTTTCATAACTGATAGTGGGATAATCAAATTGTCATCA
GCCATCTACAAAAGGCCATACCCGATGAGATATTTTGATGTGGGAGAAAATTTGTTTGGC
AACGAAGGTGGTGAGCACATTGCGACTTGTTTGTACAATATAGAAGATCGCCAAAATTAT
GAAAAATCTGGCAACTTGCCTGCTGATGTGATGAAAATTATTAAACCAAAACTGGAGTTG
CTGAAACACCGGGACGACTACGAGTTTTTTGAAACTAAGTCGTTAATTGTTGGATCCGAG
GGAGCAACACTTACGGTTGGAGGATGTATTGTTGATATTCCACAAAATGCTTTGAGTCAA
CCGACCACAATCAAACTCACTTCATGTTACGGAAGACGTAGCAAAACGCTTGACCACGAG
TCTATTTCCGAGGAATCAAAAAAGCGGTTGTTATATGTTTCTATATGCGACTTTCCTGCT
GTTCATTTATTAAATTCTGACTACCTAAGAAAAGAAGTACACCAAGGATCATTTAAAATT
AGTTCGGAAAGGGCATCATTCGAAATTTTGAGCCCTGTCGGGTTTGACACTGATCCAACG
ACACTGGACATATATGAAATTTGTACAAAACCACTCTTTGAATTTCAAATAGGAATTTAC
CAAAATAACCGTGAAGAGACAGACGACAAATTCAAAATTTTAATCAAATCAACTGACGGA
AAATCAACTGTTTATGGAAAAGGAGATGAAGGAACTTTTTTTATGAATCCCTTTGCTAAA
AAGTTACAAAAAGCAGATGTTGCAGCAGTATCTATAACCATCAATAAAGGAAAACAAGAG
CAGAACGTTCACATGGAAGGGGCAATAGTTGACGGAGGATCAATAGTAGGATCTCAAGGG
AACGTTGATACCACCAAACGTGTGCTTTCCACCAGTCAAACTCCTCAGTGTGAAGACTCG
GAGCCGTCAGAATATTGCGGCCCAGCTGCCAAACGTCGGAGAATGGATTCGCACGAGCAG
CACGACGAGTAA

InterProScan

Gene3D
LRR_dom_sf (IPR032675) - T[1-156] 2.1E-21
Pfam
Leu-rich_rpt (IPR001611) - T[3-20] 1.5 - T[55-74] 0.085

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value