Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Clone 'ciad049a07' > 
  2. Transcript 'KH2012:KH.C4.191.v1....' > 
  3. Transcript 'Phmamm.CG.MTP2014.S9...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S984.g13121.01.t

Possible name(s)

AMY1A; AMY1B; AMY1C

Gene model

Phmamm.CG.MTP2014.S984.g13121

Location

S984 [54,756 / 58,561]

Sequences

Amino acid sequence

Length: 347

>Phmamm.CG.MTP2014.S984.g13121.01.p
MNDLISLGVAGFRVDACKHMWPGDLDAIFKGLNNLPDGLKPFIYQEVIDQGGEPITASQY
FYLGRVTEFKYGLNLHKNIDKIQHLWNFGSDWGMMPDGNALVFLNNHDNQRGHGGGGGII
TFKDSYNLKIFTAFMMAWPYGVPRVMSSYLFNDGSEGPPPNQRSVNSDGSCGNGWVCEHR
WRQIKNMAAFAGAAGNTPVTNWWSAENQIAFSRGNRAFPAINRASGTMSGRFQTGLPAGK
YCNVNSYDFVNNACTGPCVMVDCSGFATISIPQSSDPVVALHINAQCGCTGADCTCGGSD
KPTSCAVDHPSKRDCGYFGITSAQCENKGCCWAESTAAGVPWCYYRA

Nucleotide sequence

Length: 1,044

>Phmamm.CG.MTP2014.S984.g13121.01.t
ATGAATGACCTCATCTCGTTGGGGGTAGCTGGATTTCGGGTCGATGCTTGCAAACATATG
TGGCCTGGAGACTTGGACGCAATCTTCAAAGGTCTTAACAATCTTCCAGATGGCTTGAAA
CCTTTTATCTATCAGGAGGTTATAGACCAAGGAGGTGAACCAATCACAGCCTCCCAATAT
TTTTATCTCGGAAGAGTGACAGAGTTCAAATACGGACTCAATTTGCACAAGAACATTGAC
AAAATTCAGCACCTGTGGAACTTTGGATCAGATTGGGGAATGATGCCTGATGGGAATGCT
CTGGTCTTCCTCAATAACCATGACAACCAGAGAGGACATGGCGGCGGCGGAGGAATCATC
ACTTTCAAAGATTCGTACAACCTTAAGATCTTCACCGCATTTATGATGGCCTGGCCATAC
GGAGTTCCACGTGTGATGTCCAGCTATTTGTTCAATGACGGAAGTGAGGGTCCCCCACCC
AACCAGCGGAGTGTAAATTCTGATGGAAGTTGCGGCAATGGATGGGTTTGCGAACACAGA
TGGAGACAAATCAAGAACATGGCTGCCTTTGCTGGGGCTGCAGGAAATACACCTGTGACC
AACTGGTGGAGCGCAGAAAACCAGATTGCATTTTCCCGTGGAAATCGGGCTTTTCCCGCC
ATCAACAGGGCTTCAGGAACAATGAGTGGAAGATTTCAGACCGGATTGCCAGCAGGGAAA
TATTGCAATGTCAATTCTTACGATTTTGTTAACAATGCATGCACAGGACCTTGTGTGATG
GTCGATTGTTCCGGTTTCGCAACCATCAGCATTCCACAGTCATCAGATCCGGTTGTAGCT
CTTCACATTAACGCTCAATGCGGCTGCACCGGTGCGGATTGTACGTGCGGGGGCTCTGAT
AAACCAACAAGCTGCGCCGTTGATCATCCATCTAAGAGGGACTGTGGTTATTTTGGCATC
ACATCAGCTCAGTGCGAAAACAAGGGATGTTGTTGGGCAGAATCAACTGCCGCTGGAGTT
CCATGGTGCTACTATCGCGCATAG

InterProScan

SUPERFAMILY
Glycoside_hydrolase_SF (IPR017853) - T[1-190] 8.84E-39
PRINTS
Alpha_amylase (IPR006046) - T[9-20] 2.0E-16 - T[42-60] 2.0E-16 - T[98-110] 2.0E-16
Gene3D
Glyco_hydro_b (IPR013780) - T[197-287] 1.1E-28
SMART
A-amylase_C (IPR031319) - T[200-286] 2.4E-29
Pfam
A-amylase/branching_C (IPR006048) - T[205-275] 3.7E-9
SMART
P_trefoil_dom (IPR000519) - T[303-347] 4.2E-9
ProSiteProfiles
P_trefoil_dom (IPR000519) - T[303-347] 17.205
CDD
P_trefoil_dom (IPR000519) - T[304-346] 3.55206E-12
Pfam
P_trefoil_dom (IPR000519) - T[305-345] 8.8E-13
ProSitePatterns
P_trefoil_CS (IPR017957) - T[312-332] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
AMYP_HUMAN 50.637 % 283 5.57E-92
AMY1_HUMAN 50.955 % 287 2.23E-93
AMY2B_HUMAN 51.274 % 286 6.6E-93